miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 15604 0.67 0.591675
Target:  5'- aCUCGAagaUCGuGGCCGCGggcacgCCGCuGCGGAg -3'
miRNA:   3'- -GGGUU---AGC-CCGGCGUa-----GGCG-UGCUUg -5'
18757 3' -56.5 NC_004683.1 + 17323 0.66 0.645734
Target:  5'- cCCCGuaCGGcCCGUAUgCGUugGGGCg -3'
miRNA:   3'- -GGGUuaGCCcGGCGUAgGCGugCUUG- -5'
18757 3' -56.5 NC_004683.1 + 17861 0.66 0.645734
Target:  5'- aCCCAAccgggCGGGCCGgGgacgCCGCA-GcGCg -3'
miRNA:   3'- -GGGUUa----GCCCGGCgUa---GGCGUgCuUG- -5'
18757 3' -56.5 NC_004683.1 + 18300 0.67 0.624081
Target:  5'- -gCAGUCGGGCCcggagacgggcGCAUCgGCAacCGAugACa -3'
miRNA:   3'- ggGUUAGCCCGG-----------CGUAGgCGU--GCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 20134 0.67 0.591675
Target:  5'- aCCUcGUCGGGCC-CAaCCGCGCc--- -3'
miRNA:   3'- -GGGuUAGCCCGGcGUaGGCGUGcuug -5'
18757 3' -56.5 NC_004683.1 + 20233 0.69 0.517567
Target:  5'- gCgCAGUCGGuGCCggGUAUCgGCGCGAucaGCa -3'
miRNA:   3'- -GgGUUAGCC-CGG--CGUAGgCGUGCU---UG- -5'
18757 3' -56.5 NC_004683.1 + 20298 0.66 0.641405
Target:  5'- aCCCGGcCgGGGCggcgacggcggcagCGCGUucaugucCCGCGCGAACa -3'
miRNA:   3'- -GGGUUaG-CCCG--------------GCGUA-------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 21480 0.68 0.570222
Target:  5'- uCCCGAUCggaaucagcaGGGCCGCGacaucagcgCCGCAUGc-- -3'
miRNA:   3'- -GGGUUAG----------CCCGGCGUa--------GGCGUGCuug -5'
18757 3' -56.5 NC_004683.1 + 21530 0.66 0.69948
Target:  5'- uCCCGGUCuGGuGCCGCuacaucgacgugAUCCuGCugGGcgGCg -3'
miRNA:   3'- -GGGUUAG-CC-CGGCG------------UAGG-CGugCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 22184 0.68 0.559564
Target:  5'- aUCCAGUaCGGGuuGCG-CgGgGCGGGCg -3'
miRNA:   3'- -GGGUUA-GCCCggCGUaGgCgUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 22615 0.66 0.645734
Target:  5'- aCCAGuugauUCGGGgCGCAUgugCCaGCACGAc- -3'
miRNA:   3'- gGGUU-----AGCCCgGCGUA---GG-CGUGCUug -5'
18757 3' -56.5 NC_004683.1 + 24417 0.67 0.634909
Target:  5'- aCgAGUCGGcGuuGCAUCuCGCGggUGAACu -3'
miRNA:   3'- gGgUUAGCC-CggCGUAG-GCGU--GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 25734 0.69 0.473896
Target:  5'- gCCGcgucgcagcuguucAUCGGGCCGCugCCGU-CGAGCa -3'
miRNA:   3'- gGGU--------------UAGCCCGGCGuaGGCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 25977 0.68 0.548963
Target:  5'- aCCGAggcGGCCaGCGUCUGCccgGCGAACu -3'
miRNA:   3'- gGGUUagcCCGG-CGUAGGCG---UGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 26461 0.66 0.667339
Target:  5'- aCCgCGAUCcaGGCCGC--CCGC-CGAGCc -3'
miRNA:   3'- -GG-GUUAGc-CCGGCGuaGGCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 28174 0.73 0.302078
Target:  5'- aCCA---GGGCCGCGUCCGCAaauacucagagGAGCa -3'
miRNA:   3'- gGGUuagCCCGGCGUAGGCGUg----------CUUG- -5'
18757 3' -56.5 NC_004683.1 + 29723 0.73 0.273634
Target:  5'- gCCAuuGUCGGGCuCGUAUCCGU-CGAAg -3'
miRNA:   3'- gGGU--UAGCCCG-GCGUAGGCGuGCUUg -5'
18757 3' -56.5 NC_004683.1 + 30747 0.67 0.602455
Target:  5'- gCCC-AUCGacGGCCGCugucgaCCGCACcGGCg -3'
miRNA:   3'- -GGGuUAGC--CCGGCGua----GGCGUGcUUG- -5'
18757 3' -56.5 NC_004683.1 + 31724 0.7 0.457143
Target:  5'- aCCCGAccaUCaGGGCCGCAagCUGCGCuGAu- -3'
miRNA:   3'- -GGGUU---AG-CCCGGCGUa-GGCGUG-CUug -5'
18757 3' -56.5 NC_004683.1 + 32796 0.66 0.645734
Target:  5'- cUCCGAagucgCGGGCCaGC--CgGCGCGAGCu -3'
miRNA:   3'- -GGGUUa----GCCCGG-CGuaGgCGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.