miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 1183 0.7 0.419029
Target:  5'- aCCUcggAGUCGGcGUgGCAUCCG-ACGAGCc -3'
miRNA:   3'- -GGG---UUAGCC-CGgCGUAGGCgUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 2278 0.66 0.667339
Target:  5'- uCUCGAcgcgaGGcGCUGCAccCCGCAUGAGCa -3'
miRNA:   3'- -GGGUUag---CC-CGGCGUa-GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 2778 1.11 0.000587
Target:  5'- aCCCAAUCGGGCCGCAUCCGCACGAACu -3'
miRNA:   3'- -GGGUUAGCCCGGCGUAGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 3586 0.67 0.61326
Target:  5'- gCCCGG-CGuGuCCGCGUCgGCGuCGAGCg -3'
miRNA:   3'- -GGGUUaGCcC-GGCGUAGgCGU-GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 4891 0.68 0.558502
Target:  5'- gCCGAaCuGGcCCGCGUCCGaucgacuCACGAGCa -3'
miRNA:   3'- gGGUUaGcCC-GGCGUAGGC-------GUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 6133 0.7 0.436896
Target:  5'- gCCCAA-CGGGUCGCGcggcUgguucgcguacuaCCGCAUGGGCg -3'
miRNA:   3'- -GGGUUaGCCCGGCGU----A-------------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 6562 0.66 0.667339
Target:  5'- aCCCGGcUCGGcGCUgGCGUCCucgacgcugGCGCGAcgACg -3'
miRNA:   3'- -GGGUU-AGCC-CGG-CGUAGG---------CGUGCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 8390 0.72 0.360566
Target:  5'- cCCCGcgCGGGCCGCgAUCCagcccaccaguaaauGC-CGGAUg -3'
miRNA:   3'- -GGGUuaGCCCGGCG-UAGG---------------CGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 9269 0.67 0.591675
Target:  5'- aCCCucgCGGGgCGCAUgcCCGgGCuGGACg -3'
miRNA:   3'- -GGGuuaGCCCgGCGUA--GGCgUG-CUUG- -5'
18757 3' -56.5 NC_004683.1 + 10876 0.67 0.634909
Target:  5'- uCCCGcugAUCcGaGCCGCAgaaGCGCGGACg -3'
miRNA:   3'- -GGGU---UAGcC-CGGCGUaggCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 11498 0.66 0.656547
Target:  5'- gCUGAagGuGGCCcCA-CCGCACGAGCa -3'
miRNA:   3'- gGGUUagC-CCGGcGUaGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 12016 0.68 0.570222
Target:  5'- aUCGAcgCGGGCCagcGCGcCCGCGCGGGg -3'
miRNA:   3'- gGGUUa-GCCCGG---CGUaGGCGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 12048 0.71 0.36564
Target:  5'- cCCCGGUgUGGGCagcgGCGguagccCCGCGCGGGCg -3'
miRNA:   3'- -GGGUUA-GCCCGg---CGUa-----GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 12102 0.7 0.437848
Target:  5'- cCCCGcgCGGGCgCGCuggcCCGCGuCGAu- -3'
miRNA:   3'- -GGGUuaGCCCG-GCGua--GGCGU-GCUug -5'
18757 3' -56.5 NC_004683.1 + 12562 0.68 0.542633
Target:  5'- uUCCAGgugcccugcugcgccUCGGacaGCCGCAUCUGCGCuGAGa -3'
miRNA:   3'- -GGGUU---------------AGCC---CGGCGUAGGCGUG-CUUg -5'
18757 3' -56.5 NC_004683.1 + 12691 0.66 0.674874
Target:  5'- aUCCGAggCGGGCacgGCAUCCucggcauccucggcGCGCGGGg -3'
miRNA:   3'- -GGGUUa-GCCCGg--CGUAGG--------------CGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 14581 0.75 0.217529
Target:  5'- gCCGA-CGGGUCGCAggcCCGCugGAAa -3'
miRNA:   3'- gGGUUaGCCCGGCGUa--GGCGugCUUg -5'
18757 3' -56.5 NC_004683.1 + 14781 0.67 0.624081
Target:  5'- cCCCGAUgGcuccugggauGGCaacgGCAUCCGCAUGcGCa -3'
miRNA:   3'- -GGGUUAgC----------CCGg---CGUAGGCGUGCuUG- -5'
18757 3' -56.5 NC_004683.1 + 15240 0.71 0.400709
Target:  5'- uCCUGAUCGccgauGuuGCGgaUCCGCACGAACc -3'
miRNA:   3'- -GGGUUAGCc----CggCGU--AGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 15345 0.67 0.624081
Target:  5'- aCCUggUUGGGCaGCAgCgGCcCGAACu -3'
miRNA:   3'- -GGGuuAGCCCGgCGUaGgCGuGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.