miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 2778 1.11 0.000587
Target:  5'- aCCCAAUCGGGCCGCAUCCGCACGAACu -3'
miRNA:   3'- -GGGUUAGCCCGGCGUAGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 48684 0.83 0.068773
Target:  5'- gCCCAGUCGGGgUGCAUCgGC-CGGGCa -3'
miRNA:   3'- -GGGUUAGCCCgGCGUAGgCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49136 0.79 0.123839
Target:  5'- aUCAGUCGGcGCCGUucugCUGCGCGAGCg -3'
miRNA:   3'- gGGUUAGCC-CGGCGua--GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 33927 0.76 0.176205
Target:  5'- aUCCGucuucgCGGGCCGCGUCgGCugGAu- -3'
miRNA:   3'- -GGGUua----GCCCGGCGUAGgCGugCUug -5'
18757 3' -56.5 NC_004683.1 + 49129 0.75 0.206479
Target:  5'- aCCCAuUCGGGCgcgUGCAUcgguagCCGUGCGAGCg -3'
miRNA:   3'- -GGGUuAGCCCG---GCGUA------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 14581 0.75 0.217529
Target:  5'- gCCGA-CGGGUCGCAggcCCGCugGAAa -3'
miRNA:   3'- gGGUUaGCCCGGCGUa--GGCGugCUUg -5'
18757 3' -56.5 NC_004683.1 + 45565 0.74 0.25374
Target:  5'- gCCGGUCGGuGCggggCGCGUCgCGCGCGAGa -3'
miRNA:   3'- gGGUUAGCC-CG----GCGUAG-GCGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 29723 0.73 0.273634
Target:  5'- gCCAuuGUCGGGCuCGUAUCCGU-CGAAg -3'
miRNA:   3'- gGGU--UAGCCCG-GCGUAGGCGuGCUUg -5'
18757 3' -56.5 NC_004683.1 + 44777 0.73 0.29476
Target:  5'- aCCCGGcggcggCGGGCCGCGUgCC-CGCGAucGCg -3'
miRNA:   3'- -GGGUUa-----GCCCGGCGUA-GGcGUGCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 28174 0.73 0.302078
Target:  5'- aCCA---GGGCCGCGUCCGCAaauacucagagGAGCa -3'
miRNA:   3'- gGGUuagCCCGGCGUAGGCGUg----------CUUG- -5'
18757 3' -56.5 NC_004683.1 + 49582 0.72 0.324871
Target:  5'- aCCAGUagcaGuGGCCGCAUCCucgucggcCACGAACu -3'
miRNA:   3'- gGGUUAg---C-CCGGCGUAGGc-------GUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 8390 0.72 0.360566
Target:  5'- cCCCGcgCGGGCCGCgAUCCagcccaccaguaaauGC-CGGAUg -3'
miRNA:   3'- -GGGUuaGCCCGGCG-UAGG---------------CGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 12048 0.71 0.36564
Target:  5'- cCCCGGUgUGGGCagcgGCGguagccCCGCGCGGGCg -3'
miRNA:   3'- -GGGUUA-GCCCGg---CGUa-----GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 15240 0.71 0.400709
Target:  5'- uCCUGAUCGccgauGuuGCGgaUCCGCACGAACc -3'
miRNA:   3'- -GGGUUAGCc----CggCGU--AGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 48334 0.7 0.409806
Target:  5'- aCCAGaagUGGGCCGaCGUCCGCAUc--- -3'
miRNA:   3'- gGGUUa--GCCCGGC-GUAGGCGUGcuug -5'
18757 3' -56.5 NC_004683.1 + 1183 0.7 0.419029
Target:  5'- aCCUcggAGUCGGcGUgGCAUCCG-ACGAGCc -3'
miRNA:   3'- -GGG---UUAGCC-CGgCGUAGGCgUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 6133 0.7 0.436896
Target:  5'- gCCCAA-CGGGUCGCGcggcUgguucgcguacuaCCGCAUGGGCg -3'
miRNA:   3'- -GGGUUaGCCCGGCGU----A-------------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 12102 0.7 0.437848
Target:  5'- cCCCGcgCGGGCgCGCuggcCCGCGuCGAu- -3'
miRNA:   3'- -GGGUuaGCCCG-GCGua--GGCGU-GCUug -5'
18757 3' -56.5 NC_004683.1 + 31724 0.7 0.457143
Target:  5'- aCCCGAccaUCaGGGCCGCAagCUGCGCuGAu- -3'
miRNA:   3'- -GGGUU---AG-CCCGGCGUa-GGCGUG-CUug -5'
18757 3' -56.5 NC_004683.1 + 49090 0.69 0.46696
Target:  5'- uCCCGGUCGGGCUugagggcgGCGggaUCGCgGCGGGCc -3'
miRNA:   3'- -GGGUUAGCCCGG--------CGUa--GGCG-UGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.