miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 30747 0.67 0.602455
Target:  5'- gCCC-AUCGacGGCCGCugucgaCCGCACcGGCg -3'
miRNA:   3'- -GGGuUAGC--CCGGCGua----GGCGUGcUUG- -5'
18757 3' -56.5 NC_004683.1 + 20233 0.69 0.517567
Target:  5'- gCgCAGUCGGuGCCggGUAUCgGCGCGAucaGCa -3'
miRNA:   3'- -GgGUUAGCC-CGG--CGUAGgCGUGCU---UG- -5'
18757 3' -56.5 NC_004683.1 + 56608 0.68 0.535278
Target:  5'- aCCAccgCGGGCCGCGgguacgacUaccagcacaagaagCUGCGCGAACa -3'
miRNA:   3'- gGGUua-GCCCGGCGU--------A--------------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 4891 0.68 0.558502
Target:  5'- gCCGAaCuGGcCCGCGUCCGaucgacuCACGAGCa -3'
miRNA:   3'- gGGUUaGcCC-GGCGUAGGC-------GUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49023 0.68 0.559564
Target:  5'- gCCCGAcCGGGaaGCGcUCGCACGGc- -3'
miRNA:   3'- -GGGUUaGCCCggCGUaGGCGUGCUug -5'
18757 3' -56.5 NC_004683.1 + 22184 0.68 0.559564
Target:  5'- aUCCAGUaCGGGuuGCG-CgGgGCGGGCg -3'
miRNA:   3'- -GGGUUA-GCCCggCGUaGgCgUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 12016 0.68 0.570222
Target:  5'- aUCGAcgCGGGCCagcGCGcCCGCGCGGGg -3'
miRNA:   3'- gGGUUa-GCCCGG---CGUaGGCGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 15604 0.67 0.591675
Target:  5'- aCUCGAagaUCGuGGCCGCGggcacgCCGCuGCGGAg -3'
miRNA:   3'- -GGGUU---AGC-CCGGCGUa-----GGCG-UGCUUg -5'
18757 3' -56.5 NC_004683.1 + 9269 0.67 0.591675
Target:  5'- aCCCucgCGGGgCGCAUgcCCGgGCuGGACg -3'
miRNA:   3'- -GGGuuaGCCCgGCGUA--GGCgUG-CUUG- -5'
18757 3' -56.5 NC_004683.1 + 52612 0.69 0.486912
Target:  5'- aCCCGAguacugCGGGCCGUG-CCaGCACGu-- -3'
miRNA:   3'- -GGGUUa-----GCCCGGCGUaGG-CGUGCuug -5'
18757 3' -56.5 NC_004683.1 + 46383 0.69 0.486912
Target:  5'- gCCCcGUgGGGCCGCuaCCGCGCc--- -3'
miRNA:   3'- -GGGuUAgCCCGGCGuaGGCGUGcuug -5'
18757 3' -56.5 NC_004683.1 + 25734 0.69 0.473896
Target:  5'- gCCGcgucgcagcuguucAUCGGGCCGCugCCGU-CGAGCa -3'
miRNA:   3'- gGGU--------------UAGCCCGGCGuaGGCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 33927 0.76 0.176205
Target:  5'- aUCCGucuucgCGGGCCGCGUCgGCugGAu- -3'
miRNA:   3'- -GGGUua----GCCCGGCGUAGgCGugCUug -5'
18757 3' -56.5 NC_004683.1 + 14581 0.75 0.217529
Target:  5'- gCCGA-CGGGUCGCAggcCCGCugGAAa -3'
miRNA:   3'- gGGUUaGCCCGGCGUa--GGCGugCUUg -5'
18757 3' -56.5 NC_004683.1 + 44777 0.73 0.29476
Target:  5'- aCCCGGcggcggCGGGCCGCGUgCC-CGCGAucGCg -3'
miRNA:   3'- -GGGUUa-----GCCCGGCGUA-GGcGUGCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 28174 0.73 0.302078
Target:  5'- aCCA---GGGCCGCGUCCGCAaauacucagagGAGCa -3'
miRNA:   3'- gGGUuagCCCGGCGUAGGCGUg----------CUUG- -5'
18757 3' -56.5 NC_004683.1 + 49582 0.72 0.324871
Target:  5'- aCCAGUagcaGuGGCCGCAUCCucgucggcCACGAACu -3'
miRNA:   3'- gGGUUAg---C-CCGGCGUAGGc-------GUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 8390 0.72 0.360566
Target:  5'- cCCCGcgCGGGCCGCgAUCCagcccaccaguaaauGC-CGGAUg -3'
miRNA:   3'- -GGGUuaGCCCGGCG-UAGG---------------CGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 48334 0.7 0.409806
Target:  5'- aCCAGaagUGGGCCGaCGUCCGCAUc--- -3'
miRNA:   3'- gGGUUa--GCCCGGC-GUAGGCGUGcuug -5'
18757 3' -56.5 NC_004683.1 + 6133 0.7 0.436896
Target:  5'- gCCCAA-CGGGUCGCGcggcUgguucgcguacuaCCGCAUGGGCg -3'
miRNA:   3'- -GGGUUaGCCCGGCGU----A-------------GGCGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.