miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 56608 0.68 0.535278
Target:  5'- aCCAccgCGGGCCGCGgguacgacUaccagcacaagaagCUGCGCGAACa -3'
miRNA:   3'- gGGUua-GCCCGGCGU--------A--------------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 56493 0.67 0.612179
Target:  5'- uCCCGA-CGcaugcccGGCCGCA-CCGCAUGGc- -3'
miRNA:   3'- -GGGUUaGC-------CCGGCGUaGGCGUGCUug -5'
18757 3' -56.5 NC_004683.1 + 53695 0.67 0.602455
Target:  5'- gCCUGAUCGcGCCGCAgcUCgGCgGCGAAg -3'
miRNA:   3'- -GGGUUAGCcCGGCGU--AGgCG-UGCUUg -5'
18757 3' -56.5 NC_004683.1 + 52612 0.69 0.486912
Target:  5'- aCCCGAguacugCGGGCCGUG-CCaGCACGu-- -3'
miRNA:   3'- -GGGUUa-----GCCCGGCGUaGG-CGUGCuug -5'
18757 3' -56.5 NC_004683.1 + 52223 0.67 0.602455
Target:  5'- gUCGGUCGGGuCCGCcUCgGCGaccCGGGCc -3'
miRNA:   3'- gGGUUAGCCC-GGCGuAGgCGU---GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 51930 0.67 0.61326
Target:  5'- gCUCGAgCGcGGUCgGCcgCCGUGCGAACa -3'
miRNA:   3'- -GGGUUaGC-CCGG-CGuaGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 51177 0.66 0.695221
Target:  5'- aUCCGG-CGcGCCGCcgagaacgcgccCCGCACGAGCg -3'
miRNA:   3'- -GGGUUaGCcCGGCGua----------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49915 0.66 0.656547
Target:  5'- aUCGAUCGGaCCGCAUgC-CACGAGg -3'
miRNA:   3'- gGGUUAGCCcGGCGUAgGcGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 49582 0.72 0.324871
Target:  5'- aCCAGUagcaGuGGCCGCAUCCucgucggcCACGAACu -3'
miRNA:   3'- gGGUUAg---C-CCGGCGUAGGc-------GUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49289 0.67 0.580928
Target:  5'- gCCGAUCGGGauagggCGCGgguuagCCaGCACGAGg -3'
miRNA:   3'- gGGUUAGCCCg-----GCGUa-----GG-CGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 49136 0.79 0.123839
Target:  5'- aUCAGUCGGcGCCGUucugCUGCGCGAGCg -3'
miRNA:   3'- gGGUUAGCC-CGGCGua--GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49129 0.75 0.206479
Target:  5'- aCCCAuUCGGGCgcgUGCAUcgguagCCGUGCGAGCg -3'
miRNA:   3'- -GGGUuAGCCCG---GCGUA------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49090 0.69 0.46696
Target:  5'- uCCCGGUCGGGCUugagggcgGCGggaUCGCgGCGGGCc -3'
miRNA:   3'- -GGGUUAGCCCGG--------CGUa--GGCG-UGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49023 0.68 0.559564
Target:  5'- gCCCGAcCGGGaaGCGcUCGCACGGc- -3'
miRNA:   3'- -GGGUUaGCCCggCGUaGGCGUGCUug -5'
18757 3' -56.5 NC_004683.1 + 48684 0.83 0.068773
Target:  5'- gCCCAGUCGGGgUGCAUCgGC-CGGGCa -3'
miRNA:   3'- -GGGUUAGCCCgGCGUAGgCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 48334 0.7 0.409806
Target:  5'- aCCAGaagUGGGCCGaCGUCCGCAUc--- -3'
miRNA:   3'- gGGUUa--GCCCGGC-GUAGGCGUGcuug -5'
18757 3' -56.5 NC_004683.1 + 46383 0.69 0.486912
Target:  5'- gCCCcGUgGGGCCGCuaCCGCGCc--- -3'
miRNA:   3'- -GGGuUAgCCCGGCGuaGGCGUGcuug -5'
18757 3' -56.5 NC_004683.1 + 46383 0.69 0.507259
Target:  5'- aCCGccUCGGGCCGCGUCaGC-CGGu- -3'
miRNA:   3'- gGGUu-AGCCCGGCGUAGgCGuGCUug -5'
18757 3' -56.5 NC_004683.1 + 46089 0.68 0.527958
Target:  5'- gCCGcGUCGGGCaGCAcUCGC-CGAACa -3'
miRNA:   3'- gGGU-UAGCCCGgCGUaGGCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 45565 0.74 0.25374
Target:  5'- gCCGGUCGGuGCggggCGCGUCgCGCGCGAGa -3'
miRNA:   3'- gGGUUAGCC-CG----GCGUAG-GCGUGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.