miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18758 3' -57.2 NC_004683.1 + 2902 1.1 0.000607
Target:  5'- gGACUCGUUGCCGGACUGGCGACCACCc -3'
miRNA:   3'- -CUGAGCAACGGCCUGACCGCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 47266 0.81 0.073664
Target:  5'- uGACcgCGUUGCCGGcCUGGCGcACCugCu -3'
miRNA:   3'- -CUGa-GCAACGGCCuGACCGC-UGGugG- -5'
18758 3' -57.2 NC_004683.1 + 32501 0.76 0.181851
Target:  5'- gGGCaUCGUgcaGCCGGACgUGGCGcagaccgGCCGCCu -3'
miRNA:   3'- -CUG-AGCAa--CGGCCUG-ACCGC-------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 23813 0.75 0.207904
Target:  5'- gGGgUCGgcGCCGGGgUGGUGccGCCGCCg -3'
miRNA:   3'- -CUgAGCaaCGGCCUgACCGC--UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 25116 0.73 0.248852
Target:  5'- cGGCggCGUUGCCGGucCUGGCcGCCgucACCg -3'
miRNA:   3'- -CUGa-GCAACGGCCu-GACCGcUGG---UGG- -5'
18758 3' -57.2 NC_004683.1 + 26971 0.73 0.282024
Target:  5'- uACgCGUgagcGCCGGGCaGGcCGGCCACCu -3'
miRNA:   3'- cUGaGCAa---CGGCCUGaCC-GCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 13004 0.72 0.289065
Target:  5'- cGGCUUccUGCCGGGCgccGGUGGCC-CCg -3'
miRNA:   3'- -CUGAGcaACGGCCUGa--CCGCUGGuGG- -5'
18758 3' -57.2 NC_004683.1 + 51269 0.71 0.358639
Target:  5'- cGCUCG-UGCgGGGCgcguucucGGCGGCgCGCCg -3'
miRNA:   3'- cUGAGCaACGgCCUGa-------CCGCUG-GUGG- -5'
18758 3' -57.2 NC_004683.1 + 18206 0.7 0.41114
Target:  5'- cGGCgugCGguaggUGCCGG-C-GGCGACCGCg -3'
miRNA:   3'- -CUGa--GCa----ACGGCCuGaCCGCUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 45585 0.69 0.429669
Target:  5'- cGCUCGUUGaCGGcCUGGuCGA-CGCCg -3'
miRNA:   3'- cUGAGCAACgGCCuGACC-GCUgGUGG- -5'
18758 3' -57.2 NC_004683.1 + 39611 0.69 0.43627
Target:  5'- gGGCgccCGUUccggggugggcgccGCCGGGgUGGCGACCcgaggGCCg -3'
miRNA:   3'- -CUGa--GCAA--------------CGGCCUgACCGCUGG-----UGG- -5'
18758 3' -57.2 NC_004683.1 + 10219 0.69 0.438166
Target:  5'- uACUCGUguggggUGCCGGcguacuuGCUGGCGcgguagGCCGCg -3'
miRNA:   3'- cUGAGCA------ACGGCC-------UGACCGC------UGGUGg -5'
18758 3' -57.2 NC_004683.1 + 33429 0.69 0.448681
Target:  5'- aGCUCGUa-CCGcaccACUGGcCGACCGCCg -3'
miRNA:   3'- cUGAGCAacGGCc---UGACC-GCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 27190 0.69 0.448681
Target:  5'- cGACggCGUagcggcgaugacUGCCGcGCUGGCGcgucucgauGCCGCCg -3'
miRNA:   3'- -CUGa-GCA------------ACGGCcUGACCGC---------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 1060 0.69 0.448681
Target:  5'- -cCUUGUUGCCGGuCaaGCcacGGCCACCa -3'
miRNA:   3'- cuGAGCAACGGCCuGacCG---CUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 25632 0.69 0.448681
Target:  5'- cGAC-CGcgGCCaGGGC-GGCGACCagGCCg -3'
miRNA:   3'- -CUGaGCaaCGG-CCUGaCCGCUGG--UGG- -5'
18758 3' -57.2 NC_004683.1 + 20593 0.69 0.468149
Target:  5'- --aUCG-UGCCGGAUUGGUuacCCGCCc -3'
miRNA:   3'- cugAGCaACGGCCUGACCGcu-GGUGG- -5'
18758 3' -57.2 NC_004683.1 + 25185 0.68 0.488041
Target:  5'- cGGCaaCGccGCCGGGUUGGCcaGACCGCCa -3'
miRNA:   3'- -CUGa-GCaaCGGCCUGACCG--CUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 38719 0.68 0.498136
Target:  5'- uACUcCGUUGCCuGcCUGGCGAuauCCACg -3'
miRNA:   3'- cUGA-GCAACGGcCuGACCGCU---GGUGg -5'
18758 3' -57.2 NC_004683.1 + 47079 0.68 0.508322
Target:  5'- cGGCUCGguaCCGGugUGGacaucugccccUGAUCGCCa -3'
miRNA:   3'- -CUGAGCaacGGCCugACC-----------GCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.