miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18758 3' -57.2 NC_004683.1 + 1060 0.69 0.448681
Target:  5'- -cCUUGUUGCCGGuCaaGCcacGGCCACCa -3'
miRNA:   3'- cuGAGCAACGGCCuGacCG---CUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 2902 1.1 0.000607
Target:  5'- gGACUCGUUGCCGGACUGGCGACCACCc -3'
miRNA:   3'- -CUGAGCAACGGCCUGACCGCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 3493 0.66 0.613927
Target:  5'- gGGCUaCGa-GCCGGAaucggUGGUGGCCGCg -3'
miRNA:   3'- -CUGA-GCaaCGGCCUg----ACCGCUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 7402 0.66 0.646265
Target:  5'- gGAUUCGgcgGCCGGGC-GcGCuGCCACa -3'
miRNA:   3'- -CUGAGCaa-CGGCCUGaC-CGcUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 9271 0.67 0.549881
Target:  5'- -cCUCGcggggcgcaUGcCCGGGCUGGaCGugCGCCc -3'
miRNA:   3'- cuGAGCa--------AC-GGCCUGACC-GCugGUGG- -5'
18758 3' -57.2 NC_004683.1 + 10219 0.69 0.438166
Target:  5'- uACUCGUguggggUGCCGGcguacuuGCUGGCGcgguagGCCGCg -3'
miRNA:   3'- cUGAGCA------ACGGCC-------UGACCGC------UGGUGg -5'
18758 3' -57.2 NC_004683.1 + 10803 0.67 0.57532
Target:  5'- cGGCUCGgaucagcgggaggGCCaaucGGAUUGGCGcuggccggugugGCCACCc -3'
miRNA:   3'- -CUGAGCaa-----------CGG----CCUGACCGC------------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 13004 0.72 0.289065
Target:  5'- cGGCUUccUGCCGGGCgccGGUGGCC-CCg -3'
miRNA:   3'- -CUGAGcaACGGCCUGa--CCGCUGGuGG- -5'
18758 3' -57.2 NC_004683.1 + 13366 0.66 0.657032
Target:  5'- -gUUCGUguucGCCGGGCUGuaGAuauCCGCUg -3'
miRNA:   3'- cuGAGCAa---CGGCCUGACcgCU---GGUGG- -5'
18758 3' -57.2 NC_004683.1 + 18206 0.7 0.41114
Target:  5'- cGGCgugCGguaggUGCCGG-C-GGCGACCGCg -3'
miRNA:   3'- -CUGa--GCa----ACGGCCuGaCCGCUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 20115 0.66 0.646265
Target:  5'- cGC-CGUaucaCCGGuCUGGCcgcGACCACCa -3'
miRNA:   3'- cUGaGCAac--GGCCuGACCG---CUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 20593 0.69 0.468149
Target:  5'- --aUCG-UGCCGGAUUGGUuacCCGCCc -3'
miRNA:   3'- cugAGCaACGGCCUGACCGcu-GGUGG- -5'
18758 3' -57.2 NC_004683.1 + 23813 0.75 0.207904
Target:  5'- gGGgUCGgcGCCGGGgUGGUGccGCCGCCg -3'
miRNA:   3'- -CUgAGCaaCGGCCUgACCGC--UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 24354 0.68 0.539382
Target:  5'- cGACUCGUcGCCGcaGGCcacgcggucGCGAUCACCg -3'
miRNA:   3'- -CUGAGCAaCGGC--CUGac-------CGCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 25116 0.73 0.248852
Target:  5'- cGGCggCGUUGCCGGucCUGGCcGCCgucACCg -3'
miRNA:   3'- -CUGa-GCAACGGCCu-GACCGcUGG---UGG- -5'
18758 3' -57.2 NC_004683.1 + 25185 0.68 0.488041
Target:  5'- cGGCaaCGccGCCGGGUUGGCcaGACCGCCa -3'
miRNA:   3'- -CUGa-GCaaCGGCCUGACCG--CUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 25281 0.67 0.581724
Target:  5'- uGGCcgCGcUGCCGGGCcugcaGGCGcacagcgaguACCACCu -3'
miRNA:   3'- -CUGa-GCaACGGCCUGa----CCGC----------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 25632 0.69 0.448681
Target:  5'- cGAC-CGcgGCCaGGGC-GGCGACCagGCCg -3'
miRNA:   3'- -CUGaGCaaCGG-CCUGaCCGCUGG--UGG- -5'
18758 3' -57.2 NC_004683.1 + 25878 0.66 0.601017
Target:  5'- cGGCUCGgcgucgaguucGCCGGGCagacGCuGGCCGCCu -3'
miRNA:   3'- -CUGAGCaa---------CGGCCUGac--CG-CUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 26792 0.66 0.635486
Target:  5'- cACUCuUUGUCGcGcagggcuauccGCUGGCGgGCCACCu -3'
miRNA:   3'- cUGAGcAACGGC-C-----------UGACCGC-UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.