miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18758 3' -57.2 NC_004683.1 + 52676 0.67 0.57106
Target:  5'- uACUCGggugGCuCGGGCcGGuUGACCACg -3'
miRNA:   3'- cUGAGCaa--CG-GCCUGaCC-GCUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 51637 0.68 0.528951
Target:  5'- -cCUCGUucUGCgUGcGCUGGCGGCgCGCCu -3'
miRNA:   3'- cuGAGCA--ACG-GCcUGACCGCUG-GUGG- -5'
18758 3' -57.2 NC_004683.1 + 51289 0.67 0.581724
Target:  5'- cACUCaucGCCGaGCUGGagGGCCGCCg -3'
miRNA:   3'- cUGAGcaaCGGCcUGACCg-CUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 51269 0.71 0.358639
Target:  5'- cGCUCG-UGCgGGGCgcguucucGGCGGCgCGCCg -3'
miRNA:   3'- cUGAGCaACGgCCUGa-------CCGCUG-GUGG- -5'
18758 3' -57.2 NC_004683.1 + 48608 0.66 0.622547
Target:  5'- uGACgg--UGCCGGcgaggacACUGGCGcggcauugaucgcACCGCCa -3'
miRNA:   3'- -CUGagcaACGGCC-------UGACCGC-------------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 47266 0.81 0.073664
Target:  5'- uGACcgCGUUGCCGGcCUGGCGcACCugCu -3'
miRNA:   3'- -CUGa-GCAACGGCCuGACCGC-UGGugG- -5'
18758 3' -57.2 NC_004683.1 + 47079 0.68 0.508322
Target:  5'- cGGCUCGguaCCGGugUGGacaucugccccUGAUCGCCa -3'
miRNA:   3'- -CUGAGCaacGGCCugACC-----------GCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 45585 0.69 0.429669
Target:  5'- cGCUCGUUGaCGGcCUGGuCGA-CGCCg -3'
miRNA:   3'- cUGAGCAACgGCCuGACC-GCUgGUGG- -5'
18758 3' -57.2 NC_004683.1 + 45152 0.67 0.581724
Target:  5'- -uCUCa--GCaCGGGCUGGCcGACCGCa -3'
miRNA:   3'- cuGAGcaaCG-GCCUGACCG-CUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 42729 0.68 0.527912
Target:  5'- gGGCUCGcUGUCGGuauCcGGCGcgaagcugcuguuGCCGCCg -3'
miRNA:   3'- -CUGAGCaACGGCCu--GaCCGC-------------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 42588 0.67 0.591357
Target:  5'- cGGCggUCGggGCCGGucguccgGCUgggguggucGGCGACCGCg -3'
miRNA:   3'- -CUG--AGCaaCGGCC-------UGA---------CCGCUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 41807 0.68 0.508322
Target:  5'- cGGCUCGggcagGUcuCGcGGCgaGGUGACCACCg -3'
miRNA:   3'- -CUGAGCaa---CG--GC-CUGa-CCGCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 40257 0.68 0.508322
Target:  5'- aGCUCGa---UGGACUGcGCGGCCGCg -3'
miRNA:   3'- cUGAGCaacgGCCUGAC-CGCUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 39611 0.69 0.43627
Target:  5'- gGGCgccCGUUccggggugggcgccGCCGGGgUGGCGACCcgaggGCCg -3'
miRNA:   3'- -CUGa--GCAA--------------CGGCCUgACCGCUGG-----UGG- -5'
18758 3' -57.2 NC_004683.1 + 38719 0.68 0.498136
Target:  5'- uACUcCGUUGCCuGcCUGGCGAuauCCACg -3'
miRNA:   3'- cUGA-GCAACGGcCuGACCGCU---GGUGg -5'
18758 3' -57.2 NC_004683.1 + 33429 0.69 0.448681
Target:  5'- aGCUCGUa-CCGcaccACUGGcCGACCGCCg -3'
miRNA:   3'- cUGAGCAacGGCc---UGACC-GCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 32501 0.76 0.181851
Target:  5'- gGGCaUCGUgcaGCCGGACgUGGCGcagaccgGCCGCCu -3'
miRNA:   3'- -CUG-AGCAa--CGGCCUG-ACCGC-------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 31386 0.66 0.635486
Target:  5'- cGAUguggCGguagGCCaGcACUgcGGCGACCGCCa -3'
miRNA:   3'- -CUGa---GCaa--CGGcC-UGA--CCGCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 30871 0.68 0.528951
Target:  5'- uGACggCGUU-CCGGGC-GGCGugCGCa -3'
miRNA:   3'- -CUGa-GCAAcGGCCUGaCCGCugGUGg -5'
18758 3' -57.2 NC_004683.1 + 27190 0.69 0.448681
Target:  5'- cGACggCGUagcggcgaugacUGCCGcGCUGGCGcgucucgauGCCGCCg -3'
miRNA:   3'- -CUGa-GCA------------ACGGCcUGACCGC---------UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.