Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18758 | 5' | -54.6 | NC_004683.1 | + | 18160 | 0.66 | 0.753007 |
Target: 5'- uAGGUGGCCGug---GUGCCcGCCGGg -3' miRNA: 3'- cUCCAUUGGCuggaaCGCGGuUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 24011 | 0.72 | 0.386493 |
Target: 5'- aGGGUGACCGGCCcgacgaUGcCGUCGGCCGc -3' miRNA: 3'- cUCCAUUGGCUGGa-----AC-GCGGUUGGCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 24509 | 0.69 | 0.546217 |
Target: 5'- -cGGUGGCCGGCggCUUGguccCGCCGuaGCCGAc -3' miRNA: 3'- cuCCAUUGGCUG--GAAC----GCGGU--UGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 24653 | 0.75 | 0.26073 |
Target: 5'- cGAGGUAGCCG-CCgaugggGUaGCCGACCGGc -3' miRNA: 3'- -CUCCAUUGGCuGGaa----CG-CGGUUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 25429 | 0.79 | 0.152648 |
Target: 5'- cGucGUAGCCGACCUgaaugccggUGCGCCcACCGAa -3' miRNA: 3'- -CucCAUUGGCUGGA---------ACGCGGuUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 25475 | 0.7 | 0.535479 |
Target: 5'- -uGGUGGCC-ACCgcgGCGCUGGCCGu -3' miRNA: 3'- cuCCAUUGGcUGGaa-CGCGGUUGGCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 27060 | 0.77 | 0.217133 |
Target: 5'- cGAGGUGGCCGGCCUgcccgGCGCUcACgCGu -3' miRNA: 3'- -CUCCAUUGGCUGGAa----CGCGGuUG-GCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 30495 | 0.69 | 0.60077 |
Target: 5'- -cGGcuuCUGGCCUUGCGCCA-CCa- -3' miRNA: 3'- cuCCauuGGCUGGAACGCGGUuGGcu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 40751 | 0.74 | 0.29606 |
Target: 5'- cAGGUGACCGACCUcG-GCCAgGCCGc -3' miRNA: 3'- cUCCAUUGGCUGGAaCgCGGU-UGGCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 40778 | 0.7 | 0.524816 |
Target: 5'- -cGGUGACCgccgcGACCgacGCGCUcGCCGAc -3' miRNA: 3'- cuCCAUUGG-----CUGGaa-CGCGGuUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 40919 | 0.66 | 0.753007 |
Target: 5'- -cGGau-CCGACCcggGCGCCgAGCUGAc -3' miRNA: 3'- cuCCauuGGCUGGaa-CGCGG-UUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 41062 | 0.66 | 0.732018 |
Target: 5'- cGGGUAGCagCGGCgaUGCGCgCGGCCa- -3' miRNA: 3'- cUCCAUUG--GCUGgaACGCG-GUUGGcu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 41410 | 0.69 | 0.60077 |
Target: 5'- cGGcGUGGCUGGuguggcCCUUGCGCUGAUCGAc -3' miRNA: 3'- cUC-CAUUGGCU------GGAACGCGGUUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 44111 | 0.68 | 0.649361 |
Target: 5'- cGAGGUGACCGGCgCUgagcCGCUGugggacguguucaccGCCGAc -3' miRNA: 3'- -CUCCAUUGGCUG-GAac--GCGGU---------------UGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 44663 | 0.7 | 0.503742 |
Target: 5'- uGAGGUcGGCggcgcgcgUGGCUUUGaCGCCGGCCGAa -3' miRNA: 3'- -CUCCA-UUG--------GCUGGAAC-GCGGUUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 44860 | 0.66 | 0.76332 |
Target: 5'- -uGGUGGcCCGGCCUgGagGCCGaguGCCGAu -3' miRNA: 3'- cuCCAUU-GGCUGGAaCg-CGGU---UGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 46013 | 0.67 | 0.721367 |
Target: 5'- cGAGGU-GCUGcCCgacGCGgCGGCCGAg -3' miRNA: 3'- -CUCCAuUGGCuGGaa-CGCgGUUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 47167 | 0.7 | 0.524816 |
Target: 5'- cGGG-AACCGACgCgagcaggUGCGCCAgGCCGGc -3' miRNA: 3'- cUCCaUUGGCUG-Ga------ACGCGGU-UGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 47514 | 0.7 | 0.493342 |
Target: 5'- cGGGUuucgucCCGGCCUUGCGCUGccgcGCCGc -3' miRNA: 3'- cUCCAuu----GGCUGGAACGCGGU----UGGCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 48584 | 0.66 | 0.773498 |
Target: 5'- -cGGcgagAGCgGACCUgGUGCCcGGCCGAu -3' miRNA: 3'- cuCCa---UUGgCUGGAaCGCGG-UUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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