miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18758 5' -54.6 NC_004683.1 + 425 0.66 0.732018
Target:  5'- cGAGGUcuCCaGCCgcauCGCCAACCGc -3'
miRNA:   3'- -CUCCAuuGGcUGGaac-GCGGUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 562 0.77 0.194603
Target:  5'- cGAGGUGGCCGACCUgUGCGacuuggcgggguuCCcGCCGGa -3'
miRNA:   3'- -CUCCAUUGGCUGGA-ACGC-------------GGuUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 1478 0.71 0.462762
Target:  5'- cGGGGcGuccucgaucGCCGGCUUgucGUGCCAGCCGAg -3'
miRNA:   3'- -CUCCaU---------UGGCUGGAa--CGCGGUUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 2867 1.09 0.001164
Target:  5'- aGAGGUAACCGACCUUGCGCCAACCGAg -3'
miRNA:   3'- -CUCCAUUGGCUGGAACGCGGUUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 5039 0.76 0.24759
Target:  5'- cGAGG-AACCGGCCUcgacgcgcaUGCGCCGcugGCCGc -3'
miRNA:   3'- -CUCCaUUGGCUGGA---------ACGCGGU---UGGCu -5'
18758 5' -54.6 NC_004683.1 + 6449 0.67 0.721367
Target:  5'- cGAGGUcaauGCCGAgCgucgucGCGCCAGCguCGAg -3'
miRNA:   3'- -CUCCAu---UGGCUgGaa----CGCGGUUG--GCU- -5'
18758 5' -54.6 NC_004683.1 + 6924 0.67 0.710626
Target:  5'- -uGGUAAgCGugcCCUUGCGgCgCGACCGGu -3'
miRNA:   3'- cuCCAUUgGCu--GGAACGC-G-GUUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 8079 0.69 0.589771
Target:  5'- uGAGGUGACCcGCaucgacgGCGCCGAcgaccCCGAg -3'
miRNA:   3'- -CUCCAUUGGcUGgaa----CGCGGUU-----GGCU- -5'
18758 5' -54.6 NC_004683.1 + 8380 0.73 0.343225
Target:  5'- -cGGUGAUCGGCCccGCGCgGGCCGc -3'
miRNA:   3'- cuCCAUUGGCUGGaaCGCGgUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 9082 0.74 0.303558
Target:  5'- gGAGGaacuGCCGACCgaucuucucgGCGUCGACCGGc -3'
miRNA:   3'- -CUCCau--UGGCUGGaa--------CGCGGUUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 9698 0.66 0.76332
Target:  5'- -cGGUGGCCGACCgugagGCGU--ACCu- -3'
miRNA:   3'- cuCCAUUGGCUGGaa---CGCGguUGGcu -5'
18758 5' -54.6 NC_004683.1 + 9708 0.68 0.644944
Target:  5'- uGAGGguuCCGcCCUUGCGCaguGGCCa- -3'
miRNA:   3'- -CUCCauuGGCuGGAACGCGg--UUGGcu -5'
18758 5' -54.6 NC_004683.1 + 10113 0.66 0.742569
Target:  5'- cGAGGUcg-CGGCCUaccGCGCCAgcaaguacGCCGGc -3'
miRNA:   3'- -CUCCAuugGCUGGAa--CGCGGU--------UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 10867 0.69 0.567889
Target:  5'- uGGGUGGCCGAUUgcuCGCCAacggcauuGCCGAu -3'
miRNA:   3'- cUCCAUUGGCUGGaacGCGGU--------UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 10914 0.74 0.326922
Target:  5'- aGGGUGgccacACCGGCCa-GCGCCAAuCCGAu -3'
miRNA:   3'- cUCCAU-----UGGCUGGaaCGCGGUU-GGCU- -5'
18758 5' -54.6 NC_004683.1 + 12848 0.67 0.699808
Target:  5'- cGGGUAGCCGuagcCCUgcUGCGCguACUGc -3'
miRNA:   3'- cUCCAUUGGCu---GGA--ACGCGguUGGCu -5'
18758 5' -54.6 NC_004683.1 + 14119 0.67 0.721367
Target:  5'- cGGG-AAUCG-CCUUGcCGCCGaggACCGAg -3'
miRNA:   3'- cUCCaUUGGCuGGAAC-GCGGU---UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 14398 0.66 0.732018
Target:  5'- cAGG-AGCUGACCUUgguccugcGCGCCGACaaCGGg -3'
miRNA:   3'- cUCCaUUGGCUGGAA--------CGCGGUUG--GCU- -5'
18758 5' -54.6 NC_004683.1 + 15154 0.68 0.644944
Target:  5'- uGGGGUGGCCuGggugaggacGCCUUGCcgGCCugcauGCCGAa -3'
miRNA:   3'- -CUCCAUUGG-C---------UGGAACG--CGGu----UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 17207 0.69 0.60077
Target:  5'- cGAGGUcaugguGCCGACCccgGCGCCc-CCGu -3'
miRNA:   3'- -CUCCAu-----UGGCUGGaa-CGCGGuuGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.