miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18758 5' -54.6 NC_004683.1 + 51305 0.66 0.76332
Target:  5'- gGAGGgccGCCGAugaaCCUcaaCGCCAGCCGc -3'
miRNA:   3'- -CUCCau-UGGCU----GGAac-GCGGUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 6449 0.67 0.721367
Target:  5'- cGAGGUcaauGCCGAgCgucgucGCGCCAGCguCGAg -3'
miRNA:   3'- -CUCCAu---UGGCUgGaa----CGCGGUUG--GCU- -5'
18758 5' -54.6 NC_004683.1 + 46013 0.67 0.721367
Target:  5'- cGAGGU-GCUGcCCgacGCGgCGGCCGAg -3'
miRNA:   3'- -CUCCAuUGGCuGGaa-CGCgGUUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 14398 0.66 0.732018
Target:  5'- cAGG-AGCUGACCUUgguccugcGCGCCGACaaCGGg -3'
miRNA:   3'- cUCCaUUGGCUGGAA--------CGCGGUUG--GCU- -5'
18758 5' -54.6 NC_004683.1 + 10113 0.66 0.742569
Target:  5'- cGAGGUcg-CGGCCUaccGCGCCAgcaaguacGCCGGc -3'
miRNA:   3'- -CUCCAuugGCUGGAa--CGCGGU--------UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 56881 0.66 0.753007
Target:  5'- -uGGUGAaggcccCCGACC-UGCGCCGAUg-- -3'
miRNA:   3'- cuCCAUU------GGCUGGaACGCGGUUGgcu -5'
18758 5' -54.6 NC_004683.1 + 40919 0.66 0.753007
Target:  5'- -cGGau-CCGACCcggGCGCCgAGCUGAc -3'
miRNA:   3'- cuCCauuGGCUGGaa-CGCGG-UUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 9698 0.66 0.76332
Target:  5'- -cGGUGGCCGACCgugagGCGU--ACCu- -3'
miRNA:   3'- cuCCAUUGGCUGGaa---CGCGguUGGcu -5'
18758 5' -54.6 NC_004683.1 + 44860 0.66 0.76332
Target:  5'- -uGGUGGcCCGGCCUgGagGCCGaguGCCGAu -3'
miRNA:   3'- cuCCAUU-GGCUGGAaCg-CGGU---UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 49419 0.67 0.677983
Target:  5'- cGAGGgcguucugaUGGCCGACCUgaaaacUGCCGACCu- -3'
miRNA:   3'- -CUCC---------AUUGGCUGGAac----GCGGUUGGcu -5'
18758 5' -54.6 NC_004683.1 + 44111 0.68 0.649361
Target:  5'- cGAGGUGACCGGCgCUgagcCGCUGugggacguguucaccGCCGAc -3'
miRNA:   3'- -CUCCAUUGGCUG-GAac--GCGGU---------------UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 53131 0.68 0.622841
Target:  5'- gGAGGUGACCaugucGACgUUcGCGCCc-CCGAc -3'
miRNA:   3'- -CUCCAUUGG-----CUGgAA-CGCGGuuGGCU- -5'
18758 5' -54.6 NC_004683.1 + 8380 0.73 0.343225
Target:  5'- -cGGUGAUCGGCCccGCGCgGGCCGc -3'
miRNA:   3'- cuCCAUUGGCUGGaaCGCGgUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 40778 0.7 0.524816
Target:  5'- -cGGUGACCgccgcGACCgacGCGCUcGCCGAc -3'
miRNA:   3'- cuCCAUUGG-----CUGGaa-CGCGGuUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 47167 0.7 0.524816
Target:  5'- cGGG-AACCGACgCgagcaggUGCGCCAgGCCGGc -3'
miRNA:   3'- cUCCaUUGGCUG-Ga------ACGCGGU-UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 25475 0.7 0.535479
Target:  5'- -uGGUGGCC-ACCgcgGCGCUGGCCGu -3'
miRNA:   3'- cuCCAUUGGcUGGaa-CGCGGUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 10867 0.69 0.567889
Target:  5'- uGGGUGGCCGAUUgcuCGCCAacggcauuGCCGAu -3'
miRNA:   3'- cUCCAUUGGCUGGaacGCGGU--------UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 8079 0.69 0.589771
Target:  5'- uGAGGUGACCcGCaucgacgGCGCCGAcgaccCCGAg -3'
miRNA:   3'- -CUCCAUUGGcUGgaa----CGCGGUU-----GGCU- -5'
18758 5' -54.6 NC_004683.1 + 41410 0.69 0.60077
Target:  5'- cGGcGUGGCUGGuguggcCCUUGCGCUGAUCGAc -3'
miRNA:   3'- cUC-CAUUGGCU------GGAACGCGGUUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 17207 0.69 0.60077
Target:  5'- cGAGGUcaugguGCCGACCccgGCGCCc-CCGu -3'
miRNA:   3'- -CUCCAu-----UGGCUGGaa-CGCGGuuGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.