Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18758 | 5' | -54.6 | NC_004683.1 | + | 2867 | 1.09 | 0.001164 |
Target: 5'- aGAGGUAACCGACCUUGCGCCAACCGAg -3' miRNA: 3'- -CUCCAUUGGCUGGAACGCGGUUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 25429 | 0.79 | 0.152648 |
Target: 5'- cGucGUAGCCGACCUgaaugccggUGCGCCcACCGAa -3' miRNA: 3'- -CucCAUUGGCUGGA---------ACGCGGuUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 562 | 0.77 | 0.194603 |
Target: 5'- cGAGGUGGCCGACCUgUGCGacuuggcgggguuCCcGCCGGa -3' miRNA: 3'- -CUCCAUUGGCUGGA-ACGC-------------GGuUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 27060 | 0.77 | 0.217133 |
Target: 5'- cGAGGUGGCCGGCCUgcccgGCGCUcACgCGu -3' miRNA: 3'- -CUCCAUUGGCUGGAa----CGCGGuUG-GCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 5039 | 0.76 | 0.24759 |
Target: 5'- cGAGG-AACCGGCCUcgacgcgcaUGCGCCGcugGCCGc -3' miRNA: 3'- -CUCCaUUGGCUGGA---------ACGCGGU---UGGCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 24653 | 0.75 | 0.26073 |
Target: 5'- cGAGGUAGCCG-CCgaugggGUaGCCGACCGGc -3' miRNA: 3'- -CUCCAUUGGCuGGaa----CG-CGGUUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 40751 | 0.74 | 0.29606 |
Target: 5'- cAGGUGACCGACCUcG-GCCAgGCCGc -3' miRNA: 3'- cUCCAUUGGCUGGAaCgCGGU-UGGCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 9082 | 0.74 | 0.303558 |
Target: 5'- gGAGGaacuGCCGACCgaucuucucgGCGUCGACCGGc -3' miRNA: 3'- -CUCCau--UGGCUGGaa--------CGCGGUUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 10914 | 0.74 | 0.326922 |
Target: 5'- aGGGUGgccacACCGGCCa-GCGCCAAuCCGAu -3' miRNA: 3'- cUCCAU-----UGGCUGGaaCGCGGUU-GGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 8380 | 0.73 | 0.343225 |
Target: 5'- -cGGUGAUCGGCCccGCGCgGGCCGc -3' miRNA: 3'- cuCCAUUGGCUGGaaCGCGgUUGGCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 53616 | 0.73 | 0.360105 |
Target: 5'- -uGGUGACCuugggcggauaGACCUugUGCGCgAGCCGGa -3' miRNA: 3'- cuCCAUUGG-----------CUGGA--ACGCGgUUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 24011 | 0.72 | 0.386493 |
Target: 5'- aGGGUGACCGGCCcgacgaUGcCGUCGGCCGc -3' miRNA: 3'- cUCCAUUGGCUGGa-----AC-GCGGUUGGCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 49109 | 0.72 | 0.404779 |
Target: 5'- -cGGUAGCCGugCgaGCGCUucCCGGu -3' miRNA: 3'- cuCCAUUGGCugGaaCGCGGuuGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 1478 | 0.71 | 0.462762 |
Target: 5'- cGGGGcGuccucgaucGCCGGCUUgucGUGCCAGCCGAg -3' miRNA: 3'- -CUCCaU---------UGGCUGGAa--CGCGGUUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 47514 | 0.7 | 0.493342 |
Target: 5'- cGGGUuucgucCCGGCCUUGCGCUGccgcGCCGc -3' miRNA: 3'- cUCCAuu----GGCUGGAACGCGGU----UGGCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 44663 | 0.7 | 0.503742 |
Target: 5'- uGAGGUcGGCggcgcgcgUGGCUUUGaCGCCGGCCGAa -3' miRNA: 3'- -CUCCA-UUG--------GCUGGAAC-GCGGUUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 47167 | 0.7 | 0.524816 |
Target: 5'- cGGG-AACCGACgCgagcaggUGCGCCAgGCCGGc -3' miRNA: 3'- cUCCaUUGGCUG-Ga------ACGCGGU-UGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 40778 | 0.7 | 0.524816 |
Target: 5'- -cGGUGACCgccgcGACCgacGCGCUcGCCGAc -3' miRNA: 3'- cuCCAUUGG-----CUGGaa-CGCGGuUGGCU- -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 25475 | 0.7 | 0.535479 |
Target: 5'- -uGGUGGCC-ACCgcgGCGCUGGCCGu -3' miRNA: 3'- cuCCAUUGGcUGGaa-CGCGGUUGGCu -5' |
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18758 | 5' | -54.6 | NC_004683.1 | + | 24509 | 0.69 | 0.546217 |
Target: 5'- -cGGUGGCCGGCggCUUGguccCGCCGuaGCCGAc -3' miRNA: 3'- cuCCAUUGGCUG--GAAC----GCGGU--UGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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