miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18759 3' -53.5 NC_004683.1 + 51167 0.66 0.844733
Target:  5'- gCG-GAACUGGAucCGGCGcGCCGcCGa -3'
miRNA:   3'- gGCuCUUGGCCUu-GCUGUaCGGCaGC- -5'
18759 3' -53.5 NC_004683.1 + 39649 0.67 0.799419
Target:  5'- cCCGAGGGCCGcuacguCGAgAUGCuuggaaCGUCGg -3'
miRNA:   3'- -GGCUCUUGGCcuu---GCUgUACG------GCAGC- -5'
18759 3' -53.5 NC_004683.1 + 53101 0.67 0.799419
Target:  5'- cCCGAGccaucGGCCGGGGCGuuc-GUCGUUGg -3'
miRNA:   3'- -GGCUC-----UUGGCCUUGCuguaCGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 6736 0.67 0.808863
Target:  5'- gUCGAcGGCCcGGGCGGCcgcGUGCUGUCGc -3'
miRNA:   3'- -GGCUcUUGGcCUUGCUG---UACGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 42895 0.67 0.808863
Target:  5'- cCCGAGGuGCaCGGGcugaaGCgGACGguacGCCGUCGg -3'
miRNA:   3'- -GGCUCU-UG-GCCU-----UG-CUGUa---CGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 38661 0.67 0.818127
Target:  5'- gCGAGGGCU-GAACGugAUGCgcucgcuggccgCGUCGa -3'
miRNA:   3'- gGCUCUUGGcCUUGCugUACG------------GCAGC- -5'
18759 3' -53.5 NC_004683.1 + 4214 0.67 0.818127
Target:  5'- cCCGAGAucggGCCGG--UGACGUGgCCGg-- -3'
miRNA:   3'- -GGCUCU----UGGCCuuGCUGUAC-GGCagc -5'
18759 3' -53.5 NC_004683.1 + 3376 0.67 0.830773
Target:  5'- cCCG-GAuguUCGGuugugguacgacgccGACGACGUGCCGUUc -3'
miRNA:   3'- -GGCuCUu--GGCC---------------UUGCUGUACGGCAGc -5'
18759 3' -53.5 NC_004683.1 + 15947 0.66 0.844733
Target:  5'- aCGAGuuCUGGGACGACAUcgagaauucggcGCCGa-- -3'
miRNA:   3'- gGCUCuuGGCCUUGCUGUA------------CGGCagc -5'
18759 3' -53.5 NC_004683.1 + 51228 0.68 0.749843
Target:  5'- gCGucGAACgGGcuCGGCAaGCCGUCGc -3'
miRNA:   3'- gGCu-CUUGgCCuuGCUGUaCGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 12232 0.69 0.686616
Target:  5'- gCCG-GGGCgGGAGCGcccgGCGUGCCGa-- -3'
miRNA:   3'- -GGCuCUUGgCCUUGC----UGUACGGCagc -5'
18759 3' -53.5 NC_004683.1 + 43125 0.69 0.675837
Target:  5'- cCCGAG-ACCGGcguGCGGCugcgugGCCGgaUCGa -3'
miRNA:   3'- -GGCUCuUGGCCu--UGCUGua----CGGC--AGC- -5'
18759 3' -53.5 NC_004683.1 + 46602 0.75 0.388647
Target:  5'- gUCGAGGGCCGcGACGGCAagGCCGcCGc -3'
miRNA:   3'- -GGCUCUUGGCcUUGCUGUa-CGGCaGC- -5'
18759 3' -53.5 NC_004683.1 + 21614 0.74 0.415935
Target:  5'- gUGAGGgcgGCUGGGGCGGCAacuggGCCGUCu -3'
miRNA:   3'- gGCUCU---UGGCCUUGCUGUa----CGGCAGc -5'
18759 3' -53.5 NC_004683.1 + 4020 0.71 0.555685
Target:  5'- uUCGAGAcgccaucGCCGGuaaggccaucGACGGCAUGUCGUUc -3'
miRNA:   3'- -GGCUCU-------UGGCC----------UUGCUGUACGGCAGc -5'
18759 3' -53.5 NC_004683.1 + 48955 0.71 0.567447
Target:  5'- aUCGAGAACCGGAcccGCaACAUcGCCGg-- -3'
miRNA:   3'- -GGCUCUUGGCCU---UGcUGUA-CGGCagc -5'
18759 3' -53.5 NC_004683.1 + 13247 0.71 0.610664
Target:  5'- cCCGucGACCGcauCGGCGUcGCCGUCGa -3'
miRNA:   3'- -GGCucUUGGCcuuGCUGUA-CGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 45787 0.71 0.610664
Target:  5'- aUCGAGAuccCCGGcGugGAgGUGCgCGUCGc -3'
miRNA:   3'- -GGCUCUu--GGCC-UugCUgUACG-GCAGC- -5'
18759 3' -53.5 NC_004683.1 + 19652 0.7 0.665017
Target:  5'- gCCGAGGACgGGuucAACGAC--GCCGcCGa -3'
miRNA:   3'- -GGCUCUUGgCC---UUGCUGuaCGGCaGC- -5'
18759 3' -53.5 NC_004683.1 + 51015 0.69 0.675837
Target:  5'- cCCGAGGGCUGGAugcccgACGACGagacgaucGCCG-CGa -3'
miRNA:   3'- -GGCUCUUGGCCU------UGCUGUa-------CGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.