miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18759 3' -53.5 NC_004683.1 + 386 0.68 0.729117
Target:  5'- gCCGAGAACCGucuccauGCGcCcgGCCG-CGg -3'
miRNA:   3'- -GGCUCUUGGCcu-----UGCuGuaCGGCaGC- -5'
18759 3' -53.5 NC_004683.1 + 1646 0.71 0.593312
Target:  5'- gCGGGccGCCGGGACGAUuccaacguggaucuUGCCGUCc -3'
miRNA:   3'- gGCUCu-UGGCCUUGCUGu-------------ACGGCAGc -5'
18759 3' -53.5 NC_004683.1 + 2998 0.7 0.665017
Target:  5'- gCGcAGGAUCGGcgucagccACGACAUGCCG-CGa -3'
miRNA:   3'- gGC-UCUUGGCCu-------UGCUGUACGGCaGC- -5'
18759 3' -53.5 NC_004683.1 + 3376 0.67 0.830773
Target:  5'- cCCG-GAuguUCGGuugugguacgacgccGACGACGUGCCGUUc -3'
miRNA:   3'- -GGCuCUu--GGCC---------------UUGCUGUACGGCAGc -5'
18759 3' -53.5 NC_004683.1 + 3411 0.68 0.736419
Target:  5'- cCCGAuGcAGCCGGAcagguucugccacaACGGgugugcUGUGCCGUCGg -3'
miRNA:   3'- -GGCU-C-UUGGCCU--------------UGCU------GUACGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 4020 0.71 0.555685
Target:  5'- uUCGAGAcgccaucGCCGGuaaggccaucGACGGCAUGUCGUUc -3'
miRNA:   3'- -GGCUCU-------UGGCC----------UUGCUGUACGGCAGc -5'
18759 3' -53.5 NC_004683.1 + 4131 1.12 0.001326
Target:  5'- aCCGAGAACCGGAACGACAUGCCGUCGa -3'
miRNA:   3'- -GGCUCUUGGCCUUGCUGUACGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 4214 0.67 0.818127
Target:  5'- cCCGAGAucggGCCGG--UGACGUGgCCGg-- -3'
miRNA:   3'- -GGCUCU----UGGCCuuGCUGUAC-GGCagc -5'
18759 3' -53.5 NC_004683.1 + 5466 0.75 0.36256
Target:  5'- aCCGugggaucGAGCUGGAACGGCAccagguagccGCCGUCGg -3'
miRNA:   3'- -GGCu------CUUGGCCUUGCUGUa---------CGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 6177 0.69 0.718607
Target:  5'- gCCGAacaGGugCGGGAUGAacucGCCGUCa -3'
miRNA:   3'- -GGCU---CUugGCCUUGCUgua-CGGCAGc -5'
18759 3' -53.5 NC_004683.1 + 6736 0.67 0.808863
Target:  5'- gUCGAcGGCCcGGGCGGCcgcGUGCUGUCGc -3'
miRNA:   3'- -GGCUcUUGGcCUUGCUG---UACGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 6983 0.68 0.739533
Target:  5'- aCCGuGGguaGCCGuGACGACGaucgcGCCGUCGc -3'
miRNA:   3'- -GGCuCU---UGGCcUUGCUGUa----CGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 10649 0.67 0.789803
Target:  5'- cCCGcucAGCCuGAGCGACgAUGCgGUCGu -3'
miRNA:   3'- -GGCuc-UUGGcCUUGCUG-UACGgCAGC- -5'
18759 3' -53.5 NC_004683.1 + 11373 0.66 0.853178
Target:  5'- gCCGAGAuCgCGGAACuugGUGCCGUa- -3'
miRNA:   3'- -GGCUCUuG-GCCUUGcugUACGGCAgc -5'
18759 3' -53.5 NC_004683.1 + 12232 0.69 0.686616
Target:  5'- gCCG-GGGCgGGAGCGcccgGCGUGCCGa-- -3'
miRNA:   3'- -GGCuCUUGgCCUUGC----UGUACGGCagc -5'
18759 3' -53.5 NC_004683.1 + 12782 0.68 0.749843
Target:  5'- gCCGAGGauGCCGaGGAUGcCGUGCCcgccUCGg -3'
miRNA:   3'- -GGCUCU--UGGC-CUUGCuGUACGGc---AGC- -5'
18759 3' -53.5 NC_004683.1 + 13020 0.7 0.665017
Target:  5'- aCCGGccACCGGuGgGGCG-GCCGUCGa -3'
miRNA:   3'- -GGCUcuUGGCCuUgCUGUaCGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 13247 0.71 0.610664
Target:  5'- cCCGucGACCGcauCGGCGUcGCCGUCGa -3'
miRNA:   3'- -GGCucUUGGCcuuGCUGUA-CGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 13786 0.66 0.844733
Target:  5'- aCCGGcGaAACCGGAuGCGACcuUGCCGa-- -3'
miRNA:   3'- -GGCU-C-UUGGCCU-UGCUGu-ACGGCagc -5'
18759 3' -53.5 NC_004683.1 + 15947 0.66 0.844733
Target:  5'- aCGAGuuCUGGGACGACAUcgagaauucggcGCCGa-- -3'
miRNA:   3'- gGCUCuuGGCCUUGCUGUA------------CGGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.