Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 17455 | 0.68 | 0.759023 |
Target: 5'- aUCGGGcACCGGGuagaucaGCGACAUgagGCCGcCGc -3' miRNA: 3'- -GGCUCuUGGCCU-------UGCUGUA---CGGCaGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 18897 | 0.71 | 0.567448 |
Target: 5'- cCCGAGAuaaACgCGGugaugAACGGCAgaucgaugcccuUGCCGUCGu -3' miRNA: 3'- -GGCUCU---UG-GCC-----UUGCUGU------------ACGGCAGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 19652 | 0.7 | 0.665017 |
Target: 5'- gCCGAGGACgGGuucAACGAC--GCCGcCGa -3' miRNA: 3'- -GGCUCUUGgCC---UUGCUGuaCGGCaGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 21170 | 0.73 | 0.463913 |
Target: 5'- gCCGAcgguGAACCGGuaccGCGGaaacCAUGCCGUCc -3' miRNA: 3'- -GGCU----CUUGGCCu---UGCU----GUACGGCAGc -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 21614 | 0.74 | 0.415935 |
Target: 5'- gUGAGGgcgGCUGGGGCGGCAacuggGCCGUCu -3' miRNA: 3'- gGCUCU---UGGCCUUGCUGUa----CGGCAGc -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 23355 | 0.67 | 0.818127 |
Target: 5'- gCCGGGGACCGG----GC-UGCgGUCGa -3' miRNA: 3'- -GGCUCUUGGCCuugcUGuACGgCAGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 24023 | 0.76 | 0.337714 |
Target: 5'- aCGAGcuuggccaggguGACCGGccCGACgAUGCCGUCGg -3' miRNA: 3'- gGCUC------------UUGGCCuuGCUG-UACGGCAGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 25665 | 0.68 | 0.770101 |
Target: 5'- gCUGAuGAACUGcGACGGCcgccGUGCCGUUGc -3' miRNA: 3'- -GGCU-CUUGGCcUUGCUG----UACGGCAGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 28644 | 0.76 | 0.329712 |
Target: 5'- gCCGAGAcuuGgCGGcgcuCGGCGUGCCGUCu -3' miRNA: 3'- -GGCUCU---UgGCCuu--GCUGUACGGCAGc -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 30845 | 0.74 | 0.425289 |
Target: 5'- gCCGAcGGugcGCCGGugcgguCGACAgcgGCCGUCGa -3' miRNA: 3'- -GGCU-CU---UGGCCuu----GCUGUa--CGGCAGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 35618 | 0.66 | 0.836071 |
Target: 5'- aCGaAGAGgCGGcAACGGCAuaUGCCaUCGg -3' miRNA: 3'- gGC-UCUUgGCC-UUGCUGU--ACGGcAGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 37006 | 0.67 | 0.826301 |
Target: 5'- uCCGGGAuaccGCCGGGGCGAUGgcgGauucucgaccacaCCGUCu -3' miRNA: 3'- -GGCUCU----UGGCCUUGCUGUa--C-------------GGCAGc -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 38661 | 0.67 | 0.818127 |
Target: 5'- gCGAGGGCU-GAACGugAUGCgcucgcuggccgCGUCGa -3' miRNA: 3'- gGCUCUUGGcCUUGCugUACG------------GCAGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 38892 | 0.66 | 0.869379 |
Target: 5'- cCCGAuGAGCUGGGgaugccGCGGaAUGCuCGUCu -3' miRNA: 3'- -GGCU-CUUGGCCU------UGCUgUACG-GCAGc -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 39649 | 0.67 | 0.799419 |
Target: 5'- cCCGAGGGCCGcuacguCGAgAUGCuuggaaCGUCGg -3' miRNA: 3'- -GGCUCUUGGCcuu---GCUgUACG------GCAGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 42895 | 0.67 | 0.808863 |
Target: 5'- cCCGAGGuGCaCGGGcugaaGCgGACGguacGCCGUCGg -3' miRNA: 3'- -GGCUCU-UG-GCCU-----UG-CUGUa---CGGCAGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 43125 | 0.69 | 0.675837 |
Target: 5'- cCCGAG-ACCGGcguGCGGCugcgugGCCGgaUCGa -3' miRNA: 3'- -GGCUCuUGGCCu--UGCUGua----CGGC--AGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 44758 | 0.66 | 0.856492 |
Target: 5'- gCCGAGAuccaaaccuacgacCCGGcGGCGGCggGCCG-CGu -3' miRNA: 3'- -GGCUCUu-------------GGCC-UUGCUGuaCGGCaGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 45787 | 0.71 | 0.610664 |
Target: 5'- aUCGAGAuccCCGGcGugGAgGUGCgCGUCGc -3' miRNA: 3'- -GGCUCUu--GGCC-UugCUgUACG-GCAGC- -5' |
|||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 46602 | 0.75 | 0.388647 |
Target: 5'- gUCGAGGGCCGcGACGGCAagGCCGcCGc -3' miRNA: 3'- -GGCUCUUGGCcUUGCUGUa-CGGCaGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home