miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18759 3' -53.5 NC_004683.1 + 6177 0.69 0.718607
Target:  5'- gCCGAacaGGugCGGGAUGAacucGCCGUCa -3'
miRNA:   3'- -GGCU---CUugGCCUUGCUgua-CGGCAGc -5'
18759 3' -53.5 NC_004683.1 + 386 0.68 0.729117
Target:  5'- gCCGAGAACCGucuccauGCGcCcgGCCG-CGg -3'
miRNA:   3'- -GGCUCUUGGCcu-----UGCuGuaCGGCaGC- -5'
18759 3' -53.5 NC_004683.1 + 3411 0.68 0.736419
Target:  5'- cCCGAuGcAGCCGGAcagguucugccacaACGGgugugcUGUGCCGUCGg -3'
miRNA:   3'- -GGCU-C-UUGGCCU--------------UGCU------GUACGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 6983 0.68 0.739533
Target:  5'- aCCGuGGguaGCCGuGACGACGaucgcGCCGUCGc -3'
miRNA:   3'- -GGCuCU---UGGCcUUGCUGUa----CGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 12782 0.68 0.749843
Target:  5'- gCCGAGGauGCCGaGGAUGcCGUGCCcgccUCGg -3'
miRNA:   3'- -GGCUCU--UGGC-CUUGCuGUACGGc---AGC- -5'
18759 3' -53.5 NC_004683.1 + 51228 0.68 0.749843
Target:  5'- gCGucGAACgGGcuCGGCAaGCCGUCGc -3'
miRNA:   3'- gGCu-CUUGgCCuuGCUGUaCGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 17455 0.68 0.759023
Target:  5'- aUCGGGcACCGGGuagaucaGCGACAUgagGCCGcCGc -3'
miRNA:   3'- -GGCUCuUGGCCU-------UGCUGUA---CGGCaGC- -5'
18759 3' -53.5 NC_004683.1 + 25665 0.68 0.770101
Target:  5'- gCUGAuGAACUGcGACGGCcgccGUGCCGUUGc -3'
miRNA:   3'- -GGCU-CUUGGCcUUGCUG----UACGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 10649 0.67 0.789803
Target:  5'- cCCGcucAGCCuGAGCGACgAUGCgGUCGu -3'
miRNA:   3'- -GGCuc-UUGGcCUUGCUG-UACGgCAGC- -5'
18759 3' -53.5 NC_004683.1 + 51325 0.67 0.799419
Target:  5'- gCCGAGGGCCuucuGCGACGgcuUGCCGa-- -3'
miRNA:   3'- -GGCUCUUGGccu-UGCUGU---ACGGCagc -5'
18759 3' -53.5 NC_004683.1 + 39649 0.67 0.799419
Target:  5'- cCCGAGGGCCGcuacguCGAgAUGCuuggaaCGUCGg -3'
miRNA:   3'- -GGCUCUUGGCcuu---GCUgUACG------GCAGC- -5'
18759 3' -53.5 NC_004683.1 + 53101 0.67 0.799419
Target:  5'- cCCGAGccaucGGCCGGGGCGuuc-GUCGUUGg -3'
miRNA:   3'- -GGCUC-----UUGGCCUUGCuguaCGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 6736 0.67 0.808863
Target:  5'- gUCGAcGGCCcGGGCGGCcgcGUGCUGUCGc -3'
miRNA:   3'- -GGCUcUUGGcCUUGCUG---UACGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 42895 0.67 0.808863
Target:  5'- cCCGAGGuGCaCGGGcugaaGCgGACGguacGCCGUCGg -3'
miRNA:   3'- -GGCUCU-UG-GCCU-----UG-CUGUa---CGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 38661 0.67 0.818127
Target:  5'- gCGAGGGCU-GAACGugAUGCgcucgcuggccgCGUCGa -3'
miRNA:   3'- gGCUCUUGGcCUUGCugUACG------------GCAGC- -5'
18759 3' -53.5 NC_004683.1 + 4214 0.67 0.818127
Target:  5'- cCCGAGAucggGCCGG--UGACGUGgCCGg-- -3'
miRNA:   3'- -GGCUCU----UGGCCuuGCUGUAC-GGCagc -5'
18759 3' -53.5 NC_004683.1 + 23355 0.67 0.818127
Target:  5'- gCCGGGGACCGG----GC-UGCgGUCGa -3'
miRNA:   3'- -GGCUCUUGGCCuugcUGuACGgCAGC- -5'
18759 3' -53.5 NC_004683.1 + 37006 0.67 0.826301
Target:  5'- uCCGGGAuaccGCCGGGGCGAUGgcgGauucucgaccacaCCGUCu -3'
miRNA:   3'- -GGCUCU----UGGCCUUGCUGUa--C-------------GGCAGc -5'
18759 3' -53.5 NC_004683.1 + 49443 0.67 0.827199
Target:  5'- uCCGGGGcagguGCaGGGGC-ACcgGCCGUCGu -3'
miRNA:   3'- -GGCUCU-----UGgCCUUGcUGuaCGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 3376 0.67 0.830773
Target:  5'- cCCG-GAuguUCGGuugugguacgacgccGACGACGUGCCGUUc -3'
miRNA:   3'- -GGCuCUu--GGCC---------------UUGCUGUACGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.