miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18760 3' -57.9 NC_004683.1 + 48231 0.66 0.574331
Target:  5'- uGCCgcUUGGUGAGCAcCUggaaugUGUGCUGUg -3'
miRNA:   3'- cCGG--AGCCGCUCGUuGA------ACGCGACGa -5'
18760 3' -57.9 NC_004683.1 + 18269 0.66 0.574331
Target:  5'- uGCC-CGGCGuGCAgacacagcGCgucGUGCUGCa -3'
miRNA:   3'- cCGGaGCCGCuCGU--------UGaa-CGCGACGa -5'
18760 3' -57.9 NC_004683.1 + 41181 0.66 0.563586
Target:  5'- aGGCCcCGGCcguGGCAGCg-GCGCgggGCc -3'
miRNA:   3'- -CCGGaGCCGc--UCGUUGaaCGCGa--CGa -5'
18760 3' -57.9 NC_004683.1 + 40869 0.66 0.563586
Target:  5'- cGCCgUCGGCGAGCG-CgucgGuCGCgGCg -3'
miRNA:   3'- cCGG-AGCCGCUCGUuGaa--C-GCGaCGa -5'
18760 3' -57.9 NC_004683.1 + 5031 0.66 0.563586
Target:  5'- cGGCCUCGaCGcGCA---UGCGCcGCUg -3'
miRNA:   3'- -CCGGAGCcGCuCGUugaACGCGaCGA- -5'
18760 3' -57.9 NC_004683.1 + 32956 0.66 0.54651
Target:  5'- uGGCCUCGauccggucgacgaguGCG-GCAACgUUGCGCaccguguggcccUGCUu -3'
miRNA:   3'- -CCGGAGC---------------CGCuCGUUG-AACGCG------------ACGA- -5'
18760 3' -57.9 NC_004683.1 + 37447 0.66 0.542267
Target:  5'- cGCCacuUCGGCGAGgAgcuguucaaGCUUGCGCU-Cg -3'
miRNA:   3'- cCGG---AGCCGCUCgU---------UGAACGCGAcGa -5'
18760 3' -57.9 NC_004683.1 + 15403 0.67 0.500501
Target:  5'- gGGCCUCGG---GCAACaaugUGCcgccGCUGCUg -3'
miRNA:   3'- -CCGGAGCCgcuCGUUGa---ACG----CGACGA- -5'
18760 3' -57.9 NC_004683.1 + 41040 0.67 0.480153
Target:  5'- cGGCCaggUCGGCGuggccgacgGGCAACggcgGCGCggucaGCUc -3'
miRNA:   3'- -CCGG---AGCCGC---------UCGUUGaa--CGCGa----CGA- -5'
18760 3' -57.9 NC_004683.1 + 52235 0.67 0.480153
Target:  5'- cGCCUCGGCGAcCcgGGCcgGCGCgGCa -3'
miRNA:   3'- cCGGAGCCGCUcG--UUGaaCGCGaCGa -5'
18760 3' -57.9 NC_004683.1 + 40298 0.67 0.470131
Target:  5'- gGGCCugcUCGGCGucguaGGCAGCccggGCGaaCUGCUg -3'
miRNA:   3'- -CCGG---AGCCGC-----UCGUUGaa--CGC--GACGA- -5'
18760 3' -57.9 NC_004683.1 + 5918 0.68 0.450415
Target:  5'- cGCCUUGGCG-GCggUgccGCGCgGCg -3'
miRNA:   3'- cCGGAGCCGCuCGuuGaa-CGCGaCGa -5'
18760 3' -57.9 NC_004683.1 + 13718 0.68 0.421718
Target:  5'- cGGUUUCgccGGUGcGCGGCcUGCGCUGCc -3'
miRNA:   3'- -CCGGAG---CCGCuCGUUGaACGCGACGa -5'
18760 3' -57.9 NC_004683.1 + 6014 0.68 0.421718
Target:  5'- -aCCUCGGCGAGCGcggacaACUUcGUcCUGCUc -3'
miRNA:   3'- ccGGAGCCGCUCGU------UGAA-CGcGACGA- -5'
18760 3' -57.9 NC_004683.1 + 46920 0.68 0.418909
Target:  5'- aGGCgCUgccgacgugcacgaCGGUgGAGCGGCacGCGCUGCUg -3'
miRNA:   3'- -CCG-GA--------------GCCG-CUCGUUGaaCGCGACGA- -5'
18760 3' -57.9 NC_004683.1 + 6944 0.69 0.403209
Target:  5'- cGGCCgacuggCGGCGGGCGGug-GUGCaGCUc -3'
miRNA:   3'- -CCGGa-----GCCGCUCGUUgaaCGCGaCGA- -5'
18760 3' -57.9 NC_004683.1 + 44802 0.69 0.385223
Target:  5'- cGGCCUCGGCGuAGUgguacgucGGCggGCGCgucaugacUGCa -3'
miRNA:   3'- -CCGGAGCCGC-UCG--------UUGaaCGCG--------ACGa -5'
18760 3' -57.9 NC_004683.1 + 320 0.69 0.376432
Target:  5'- cGGuUCUCGGCcAGCAg---GCGCUGCg -3'
miRNA:   3'- -CC-GGAGCCGcUCGUugaaCGCGACGa -5'
18760 3' -57.9 NC_004683.1 + 30092 0.69 0.357572
Target:  5'- cGGgCUCGGCGGGCAGCcgacgcagugaGCGUUGg- -3'
miRNA:   3'- -CCgGAGCCGCUCGUUGaa---------CGCGACga -5'
18760 3' -57.9 NC_004683.1 + 44633 0.7 0.350049
Target:  5'- cGGCCgaaUCGGCGAGgAACUUGaaccaaucggcguCGUUGUa -3'
miRNA:   3'- -CCGG---AGCCGCUCgUUGAAC-------------GCGACGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.