Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18760 | 3' | -57.9 | NC_004683.1 | + | 320 | 0.69 | 0.376432 |
Target: 5'- cGGuUCUCGGCcAGCAg---GCGCUGCg -3' miRNA: 3'- -CC-GGAGCCGcUCGUugaaCGCGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 1677 | 0.74 | 0.181312 |
Target: 5'- gGGCCUCGaCGAucGCAGCgcggccggcGCGCUGCUg -3' miRNA: 3'- -CCGGAGCcGCU--CGUUGaa-------CGCGACGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 4390 | 1.09 | 0.000489 |
Target: 5'- cGGCCUCGGCGAGCAACUUGCGCUGCUc -3' miRNA: 3'- -CCGGAGCCGCUCGUUGAACGCGACGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 5031 | 0.66 | 0.563586 |
Target: 5'- cGGCCUCGaCGcGCA---UGCGCcGCUg -3' miRNA: 3'- -CCGGAGCcGCuCGUugaACGCGaCGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 5918 | 0.68 | 0.450415 |
Target: 5'- cGCCUUGGCG-GCggUgccGCGCgGCg -3' miRNA: 3'- cCGGAGCCGCuCGuuGaa-CGCGaCGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 6014 | 0.68 | 0.421718 |
Target: 5'- -aCCUCGGCGAGCGcggacaACUUcGUcCUGCUc -3' miRNA: 3'- ccGGAGCCGCUCGU------UGAA-CGcGACGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 6944 | 0.69 | 0.403209 |
Target: 5'- cGGCCgacuggCGGCGGGCGGug-GUGCaGCUc -3' miRNA: 3'- -CCGGa-----GCCGCUCGUUgaaCGCGaCGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 12801 | 0.7 | 0.318768 |
Target: 5'- cGCCgcuggCGGauaccCGGGCGAUgcgGCGCUGCUg -3' miRNA: 3'- cCGGa----GCC-----GCUCGUUGaa-CGCGACGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 13718 | 0.68 | 0.421718 |
Target: 5'- cGGUUUCgccGGUGcGCGGCcUGCGCUGCc -3' miRNA: 3'- -CCGGAG---CCGCuCGUUGaACGCGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 15403 | 0.67 | 0.500501 |
Target: 5'- gGGCCUCGG---GCAACaaugUGCcgccGCUGCUg -3' miRNA: 3'- -CCGGAGCCgcuCGUUGa---ACG----CGACGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 17990 | 0.72 | 0.2613 |
Target: 5'- uGGCCg-GGUGGGCcAC-UGCGCUGUg -3' miRNA: 3'- -CCGGagCCGCUCGuUGaACGCGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 18269 | 0.66 | 0.574331 |
Target: 5'- uGCC-CGGCGuGCAgacacagcGCgucGUGCUGCa -3' miRNA: 3'- cCGGaGCCGCuCGU--------UGaa-CGCGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 20094 | 0.75 | 0.162806 |
Target: 5'- uGGCCUCGGCGguaucgacGGCGGCUacaacGCGgUGCa -3' miRNA: 3'- -CCGGAGCCGC--------UCGUUGAa----CGCgACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 24429 | 0.7 | 0.318768 |
Target: 5'- uGGCCUgCGGCGA-CGAgUcgGCGUUGCa -3' miRNA: 3'- -CCGGA-GCCGCUcGUUgAa-CGCGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 26330 | 0.77 | 0.11075 |
Target: 5'- uGCCUCGGCGAGCAGaUUGuCGC-GCUc -3' miRNA: 3'- cCGGAGCCGCUCGUUgAAC-GCGaCGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 26545 | 0.72 | 0.258661 |
Target: 5'- cGGgCUCGGCGGGCGGCcuggaucgcggugUGCaCUGCg -3' miRNA: 3'- -CCgGAGCCGCUCGUUGa------------ACGcGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 30092 | 0.69 | 0.357572 |
Target: 5'- cGGgCUCGGCGGGCAGCcgacgcagugaGCGUUGg- -3' miRNA: 3'- -CCgGAGCCGCUCGUUGaa---------CGCGACga -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 32956 | 0.66 | 0.54651 |
Target: 5'- uGGCCUCGauccggucgacgaguGCG-GCAACgUUGCGCaccguguggcccUGCUu -3' miRNA: 3'- -CCGGAGC---------------CGCuCGUUG-AACGCG------------ACGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 36930 | 0.7 | 0.34264 |
Target: 5'- cGCCcCGGCGguaucccggaGGuCAGCUUGCGCUGa- -3' miRNA: 3'- cCGGaGCCGC----------UC-GUUGAACGCGACga -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 37353 | 0.71 | 0.303559 |
Target: 5'- aGGCCcguugacccaUCGGCGuaucaAGCAcaggcuccaagGCUUcGCGCUGCUg -3' miRNA: 3'- -CCGG----------AGCCGC-----UCGU-----------UGAA-CGCGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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