miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18760 3' -57.9 NC_004683.1 + 37447 0.66 0.542267
Target:  5'- cGCCacuUCGGCGAGgAgcuguucaaGCUUGCGCU-Cg -3'
miRNA:   3'- cCGG---AGCCGCUCgU---------UGAACGCGAcGa -5'
18760 3' -57.9 NC_004683.1 + 38577 0.74 0.184737
Target:  5'- aGGCgUCGGCGuaGGCAgcgagcauccgagcGCUUGCGCcGCg -3'
miRNA:   3'- -CCGgAGCCGC--UCGU--------------UGAACGCGaCGa -5'
18760 3' -57.9 NC_004683.1 + 39246 0.74 0.196392
Target:  5'- uGCCUCGGCcuuGGCGACgaGCGgUGCg -3'
miRNA:   3'- cCGGAGCCGc--UCGUUGaaCGCgACGa -5'
18760 3' -57.9 NC_004683.1 + 40298 0.67 0.470131
Target:  5'- gGGCCugcUCGGCGucguaGGCAGCccggGCGaaCUGCUg -3'
miRNA:   3'- -CCGG---AGCCGC-----UCGUUGaa--CGC--GACGA- -5'
18760 3' -57.9 NC_004683.1 + 40869 0.66 0.563586
Target:  5'- cGCCgUCGGCGAGCG-CgucgGuCGCgGCg -3'
miRNA:   3'- cCGG-AGCCGCUCGUuGaa--C-GCGaCGa -5'
18760 3' -57.9 NC_004683.1 + 41040 0.67 0.480153
Target:  5'- cGGCCaggUCGGCGuggccgacgGGCAACggcgGCGCggucaGCUc -3'
miRNA:   3'- -CCGG---AGCCGC---------UCGUUGaa--CGCGa----CGA- -5'
18760 3' -57.9 NC_004683.1 + 41181 0.66 0.563586
Target:  5'- aGGCCcCGGCcguGGCAGCg-GCGCgggGCc -3'
miRNA:   3'- -CCGGaGCCGc--UCGUUGaaCGCGa--CGa -5'
18760 3' -57.9 NC_004683.1 + 44633 0.7 0.350049
Target:  5'- cGGCCgaaUCGGCGAGgAACUUGaaccaaucggcguCGUUGUa -3'
miRNA:   3'- -CCGG---AGCCGCUCgUUGAAC-------------GCGACGa -5'
18760 3' -57.9 NC_004683.1 + 44802 0.69 0.385223
Target:  5'- cGGCCUCGGCGuAGUgguacgucGGCggGCGCgucaugacUGCa -3'
miRNA:   3'- -CCGGAGCCGC-UCG--------UUGaaCGCG--------ACGa -5'
18760 3' -57.9 NC_004683.1 + 45676 0.71 0.288914
Target:  5'- cGGCacaUCGGCGcuGUGGCUgGUGCUGCa -3'
miRNA:   3'- -CCGg--AGCCGCu-CGUUGAaCGCGACGa -5'
18760 3' -57.9 NC_004683.1 + 46920 0.68 0.418909
Target:  5'- aGGCgCUgccgacgugcacgaCGGUgGAGCGGCacGCGCUGCUg -3'
miRNA:   3'- -CCG-GA--------------GCCG-CUCGUUGaaCGCGACGA- -5'
18760 3' -57.9 NC_004683.1 + 48231 0.66 0.574331
Target:  5'- uGCCgcUUGGUGAGCAcCUggaaugUGUGCUGUg -3'
miRNA:   3'- cCGG--AGCCGCUCGUuGA------ACGCGACGa -5'
18760 3' -57.9 NC_004683.1 + 48260 0.72 0.254741
Target:  5'- cGCCgcCGGCGAGUGGC-UGCGCaGCg -3'
miRNA:   3'- cCGGa-GCCGCUCGUUGaACGCGaCGa -5'
18760 3' -57.9 NC_004683.1 + 51053 0.71 0.296166
Target:  5'- cGCCUUGGCGGcggguGCGGCcggaGCGCUGUg -3'
miRNA:   3'- cCGGAGCCGCU-----CGUUGaa--CGCGACGa -5'
18760 3' -57.9 NC_004683.1 + 52235 0.67 0.480153
Target:  5'- cGCCUCGGCGAcCcgGGCcgGCGCgGCa -3'
miRNA:   3'- cCGGAGCCGCUcG--UUGaaCGCGaCGa -5'
18760 3' -57.9 NC_004683.1 + 52864 0.78 0.090987
Target:  5'- cGGCCUCGGCGAGCA----GCGCcucuUGCa -3'
miRNA:   3'- -CCGGAGCCGCUCGUugaaCGCG----ACGa -5'
18760 3' -57.9 NC_004683.1 + 56662 0.7 0.334542
Target:  5'- cGGCCcauggucgaGGCGGGCAAg--GCGCUGUg -3'
miRNA:   3'- -CCGGag-------CCGCUCGUUgaaCGCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.