miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18760 3' -57.9 NC_004683.1 + 5918 0.68 0.450415
Target:  5'- cGCCUUGGCG-GCggUgccGCGCgGCg -3'
miRNA:   3'- cCGGAGCCGCuCGuuGaa-CGCGaCGa -5'
18760 3' -57.9 NC_004683.1 + 40298 0.67 0.470131
Target:  5'- gGGCCugcUCGGCGucguaGGCAGCccggGCGaaCUGCUg -3'
miRNA:   3'- -CCGG---AGCCGC-----UCGUUGaa--CGC--GACGA- -5'
18760 3' -57.9 NC_004683.1 + 41040 0.67 0.480153
Target:  5'- cGGCCaggUCGGCGuggccgacgGGCAACggcgGCGCggucaGCUc -3'
miRNA:   3'- -CCGG---AGCCGC---------UCGUUGaa--CGCGa----CGA- -5'
18760 3' -57.9 NC_004683.1 + 41181 0.66 0.563586
Target:  5'- aGGCCcCGGCcguGGCAGCg-GCGCgggGCc -3'
miRNA:   3'- -CCGGaGCCGc--UCGUUGaaCGCGa--CGa -5'
18760 3' -57.9 NC_004683.1 + 40869 0.66 0.563586
Target:  5'- cGCCgUCGGCGAGCG-CgucgGuCGCgGCg -3'
miRNA:   3'- cCGG-AGCCGCUCGUuGaa--C-GCGaCGa -5'
18760 3' -57.9 NC_004683.1 + 5031 0.66 0.563586
Target:  5'- cGGCCUCGaCGcGCA---UGCGCcGCUg -3'
miRNA:   3'- -CCGGAGCcGCuCGUugaACGCGaCGA- -5'
18760 3' -57.9 NC_004683.1 + 44633 0.7 0.350049
Target:  5'- cGGCCgaaUCGGCGAGgAACUUGaaccaaucggcguCGUUGUa -3'
miRNA:   3'- -CCGG---AGCCGCUCgUUGAAC-------------GCGACGa -5'
18760 3' -57.9 NC_004683.1 + 24429 0.7 0.318768
Target:  5'- uGGCCUgCGGCGA-CGAgUcgGCGUUGCa -3'
miRNA:   3'- -CCGGA-GCCGCUcGUUgAa-CGCGACGa -5'
18760 3' -57.9 NC_004683.1 + 4390 1.09 0.000489
Target:  5'- cGGCCUCGGCGAGCAACUUGCGCUGCUc -3'
miRNA:   3'- -CCGGAGCCGCUCGUUGAACGCGACGA- -5'
18760 3' -57.9 NC_004683.1 + 52864 0.78 0.090987
Target:  5'- cGGCCUCGGCGAGCA----GCGCcucuUGCa -3'
miRNA:   3'- -CCGGAGCCGCUCGUugaaCGCG----ACGa -5'
18760 3' -57.9 NC_004683.1 + 26330 0.77 0.11075
Target:  5'- uGCCUCGGCGAGCAGaUUGuCGC-GCUc -3'
miRNA:   3'- cCGGAGCCGCUCGUUgAAC-GCGaCGA- -5'
18760 3' -57.9 NC_004683.1 + 38577 0.74 0.184737
Target:  5'- aGGCgUCGGCGuaGGCAgcgagcauccgagcGCUUGCGCcGCg -3'
miRNA:   3'- -CCGgAGCCGC--UCGU--------------UGAACGCGaCGa -5'
18760 3' -57.9 NC_004683.1 + 39246 0.74 0.196392
Target:  5'- uGCCUCGGCcuuGGCGACgaGCGgUGCg -3'
miRNA:   3'- cCGGAGCCGc--UCGUUGaaCGCgACGa -5'
18760 3' -57.9 NC_004683.1 + 26545 0.72 0.258661
Target:  5'- cGGgCUCGGCGGGCGGCcuggaucgcggugUGCaCUGCg -3'
miRNA:   3'- -CCgGAGCCGCUCGUUGa------------ACGcGACGa -5'
18760 3' -57.9 NC_004683.1 + 17990 0.72 0.2613
Target:  5'- uGGCCg-GGUGGGCcAC-UGCGCUGUg -3'
miRNA:   3'- -CCGGagCCGCUCGuUGaACGCGACGa -5'
18760 3' -57.9 NC_004683.1 + 51053 0.71 0.296166
Target:  5'- cGCCUUGGCGGcggguGCGGCcggaGCGCUGUg -3'
miRNA:   3'- cCGGAGCCGCU-----CGUUGaa--CGCGACGa -5'
18760 3' -57.9 NC_004683.1 + 48231 0.66 0.574331
Target:  5'- uGCCgcUUGGUGAGCAcCUggaaugUGUGCUGUg -3'
miRNA:   3'- cCGG--AGCCGCUCGUuGA------ACGCGACGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.