Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18760 | 3' | -57.9 | NC_004683.1 | + | 38577 | 0.74 | 0.184737 |
Target: 5'- aGGCgUCGGCGuaGGCAgcgagcauccgagcGCUUGCGCcGCg -3' miRNA: 3'- -CCGgAGCCGC--UCGU--------------UGAACGCGaCGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 52864 | 0.78 | 0.090987 |
Target: 5'- cGGCCUCGGCGAGCA----GCGCcucuUGCa -3' miRNA: 3'- -CCGGAGCCGCUCGUugaaCGCG----ACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 4390 | 1.09 | 0.000489 |
Target: 5'- cGGCCUCGGCGAGCAACUUGCGCUGCUc -3' miRNA: 3'- -CCGGAGCCGCUCGUUGAACGCGACGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 30092 | 0.69 | 0.357572 |
Target: 5'- cGGgCUCGGCGGGCAGCcgacgcagugaGCGUUGg- -3' miRNA: 3'- -CCgGAGCCGCUCGUUGaa---------CGCGACga -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 24429 | 0.7 | 0.318768 |
Target: 5'- uGGCCUgCGGCGA-CGAgUcgGCGUUGCa -3' miRNA: 3'- -CCGGA-GCCGCUcGUUgAa-CGCGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 51053 | 0.71 | 0.296166 |
Target: 5'- cGCCUUGGCGGcggguGCGGCcggaGCGCUGUg -3' miRNA: 3'- cCGGAGCCGCU-----CGUUGaa--CGCGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 5031 | 0.66 | 0.563586 |
Target: 5'- cGGCCUCGaCGcGCA---UGCGCcGCUg -3' miRNA: 3'- -CCGGAGCcGCuCGUugaACGCGaCGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 40869 | 0.66 | 0.563586 |
Target: 5'- cGCCgUCGGCGAGCG-CgucgGuCGCgGCg -3' miRNA: 3'- cCGG-AGCCGCUCGUuGaa--C-GCGaCGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 40298 | 0.67 | 0.470131 |
Target: 5'- gGGCCugcUCGGCGucguaGGCAGCccggGCGaaCUGCUg -3' miRNA: 3'- -CCGG---AGCCGC-----UCGUUGaa--CGC--GACGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 5918 | 0.68 | 0.450415 |
Target: 5'- cGCCUUGGCG-GCggUgccGCGCgGCg -3' miRNA: 3'- cCGGAGCCGCuCGuuGaa-CGCGaCGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 44633 | 0.7 | 0.350049 |
Target: 5'- cGGCCgaaUCGGCGAGgAACUUGaaccaaucggcguCGUUGUa -3' miRNA: 3'- -CCGG---AGCCGCUCgUUGAAC-------------GCGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 39246 | 0.74 | 0.196392 |
Target: 5'- uGCCUCGGCcuuGGCGACgaGCGgUGCg -3' miRNA: 3'- cCGGAGCCGc--UCGUUGaaCGCgACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 41040 | 0.67 | 0.480153 |
Target: 5'- cGGCCaggUCGGCGuggccgacgGGCAACggcgGCGCggucaGCUc -3' miRNA: 3'- -CCGG---AGCCGC---------UCGUUGaa--CGCGa----CGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 26545 | 0.72 | 0.258661 |
Target: 5'- cGGgCUCGGCGGGCGGCcuggaucgcggugUGCaCUGCg -3' miRNA: 3'- -CCgGAGCCGCUCGUUGa------------ACGcGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 44802 | 0.69 | 0.385223 |
Target: 5'- cGGCCUCGGCGuAGUgguacgucGGCggGCGCgucaugacUGCa -3' miRNA: 3'- -CCGGAGCCGC-UCG--------UUGaaCGCG--------ACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 41181 | 0.66 | 0.563586 |
Target: 5'- aGGCCcCGGCcguGGCAGCg-GCGCgggGCc -3' miRNA: 3'- -CCGGaGCCGc--UCGUUGaaCGCGa--CGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 48231 | 0.66 | 0.574331 |
Target: 5'- uGCCgcUUGGUGAGCAcCUggaaugUGUGCUGUg -3' miRNA: 3'- cCGG--AGCCGCUCGUuGA------ACGCGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 17990 | 0.72 | 0.2613 |
Target: 5'- uGGCCg-GGUGGGCcAC-UGCGCUGUg -3' miRNA: 3'- -CCGGagCCGCUCGuUGaACGCGACGa -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 26330 | 0.77 | 0.11075 |
Target: 5'- uGCCUCGGCGAGCAGaUUGuCGC-GCUc -3' miRNA: 3'- cCGGAGCCGCUCGUUgAAC-GCGaCGA- -5' |
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18760 | 3' | -57.9 | NC_004683.1 | + | 15403 | 0.67 | 0.500501 |
Target: 5'- gGGCCUCGG---GCAACaaugUGCcgccGCUGCUg -3' miRNA: 3'- -CCGGAGCCgcuCGUUGa---ACG----CGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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