miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18763 3' -66.2 NC_004683.1 + 22187 0.66 0.24436
Target:  5'- cAGUACG-GGuuGCgCGGGgCGggCGACg -3'
miRNA:   3'- -UCGUGCgCCggCGgGCCCgGCa-GCUG- -5'
18763 3' -66.2 NC_004683.1 + 24195 0.67 0.200972
Target:  5'- uGC-CGCGGCUGCC---GUCGUCGACc -3'
miRNA:   3'- uCGuGCGCCGGCGGgccCGGCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 24252 0.66 0.262538
Target:  5'- aGGCGCGCGGUCaugaCGcGGCCuugugcagGUCGGCg -3'
miRNA:   3'- -UCGUGCGCCGGcgg-GC-CCGG--------CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 24368 0.69 0.144746
Target:  5'- aGGcCACGCGGUCGCgaucaCCGGuGUCuUCGACg -3'
miRNA:   3'- -UC-GUGCGCCGGCG-----GGCC-CGGcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 24726 0.72 0.092904
Target:  5'- aGGCGCGCgaacucGGCgGCCUGGGCgccggugaCGUCGAg -3'
miRNA:   3'- -UCGUGCG------CCGgCGGGCCCG--------GCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 24771 0.66 0.256359
Target:  5'- cGGCGCGCGGCCaugGCCuCGaugaCGUCGGg -3'
miRNA:   3'- -UCGUGCGCCGG---CGG-GCccg-GCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 25273 0.68 0.177384
Target:  5'- cGCACuGCuGGCCGCgcugCCGGGCCugcaGGCg -3'
miRNA:   3'- uCGUG-CG-CCGGCG----GGCCCGGcag-CUG- -5'
18763 3' -66.2 NC_004683.1 + 25548 0.7 0.127229
Target:  5'- cGGcCugGUcGCCGCCCuGGCCGcggUCGGCa -3'
miRNA:   3'- -UC-GugCGcCGGCGGGcCCGGC---AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 28728 0.75 0.052959
Target:  5'- cGGCACGCcgagcGCCGCCaagucucGGCCGUCGGCc -3'
miRNA:   3'- -UCGUGCGc----CGGCGGgc-----CCGGCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 30786 0.7 0.120787
Target:  5'- cGGCuGCGCacGCCGCCCGGaacGCCGUCa-- -3'
miRNA:   3'- -UCG-UGCGc-CGGCGGGCC---CGGCAGcug -5'
18763 3' -66.2 NC_004683.1 + 30853 0.67 0.191226
Target:  5'- cGUGCGCaGCCGacggugcgCCGGuGCgGUCGACa -3'
miRNA:   3'- uCGUGCGcCGGCg-------GGCC-CGgCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 33237 0.67 0.190749
Target:  5'- cGGUugGCGGCCcguuuCCCGGcuagccaGUCGUCGcACg -3'
miRNA:   3'- -UCGugCGCCGGc----GGGCC-------CGGCAGC-UG- -5'
18763 3' -66.2 NC_004683.1 + 37839 0.85 0.009154
Target:  5'- gGGCuugugACGCGGCCGCCUGGGUguCGUCGGCg -3'
miRNA:   3'- -UCG-----UGCGCCGGCGGGCCCG--GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 38127 0.67 0.193141
Target:  5'- cGGCACGCGG-CGCCcgugcacaagcggaCauagcguccauggcGGGCCGUcCGACg -3'
miRNA:   3'- -UCGUGCGCCgGCGG--------------G--------------CCCGGCA-GCUG- -5'
18763 3' -66.2 NC_004683.1 + 40163 0.72 0.088112
Target:  5'- aGGCGCGCuGG--GCCCGGGCgaacagcgCGUCGACg -3'
miRNA:   3'- -UCGUGCG-CCggCGGGCCCG--------GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 40304 0.68 0.16444
Target:  5'- cGGCGCG-GGCCuGCUCGGcGUCGUaGGCa -3'
miRNA:   3'- -UCGUGCgCCGG-CGGGCC-CGGCAgCUG- -5'
18763 3' -66.2 NC_004683.1 + 41012 0.69 0.137489
Target:  5'- cGGCgGCGCGGUcagcucggCGCCCGGGUCGgaucCGGg -3'
miRNA:   3'- -UCG-UGCGCCG--------GCGGGCCCGGCa---GCUg -5'
18763 3' -66.2 NC_004683.1 + 41046 0.68 0.16444
Target:  5'- uGCGCGCGGCCaGgUCGGcGUgGcCGACg -3'
miRNA:   3'- uCGUGCGCCGG-CgGGCC-CGgCaGCUG- -5'
18763 3' -66.2 NC_004683.1 + 42581 0.72 0.088112
Target:  5'- cGCGcCGCGGCgGUCgGGGCCGgucgucCGGCu -3'
miRNA:   3'- uCGU-GCGCCGgCGGgCCCGGCa-----GCUG- -5'
18763 3' -66.2 NC_004683.1 + 42731 0.69 0.156289
Target:  5'- gGGCACacucaucgGCGGCCGCCgaucucgucgCGGGCguCGUCG-Cg -3'
miRNA:   3'- -UCGUG--------CGCCGGCGG----------GCCCG--GCAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.