miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18763 3' -66.2 NC_004683.1 + 8611 0.74 0.067482
Target:  5'- cGGUGCgGUGGCCGCCCugcagucGGuuGUCGACg -3'
miRNA:   3'- -UCGUG-CGCCGGCGGGc------CCggCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 9480 0.68 0.168658
Target:  5'- gGGCG-GCGGCCucCCCGGGCCGa---- -3'
miRNA:   3'- -UCGUgCGCCGGc-GGGCCCGGCagcug -5'
18763 3' -66.2 NC_004683.1 + 10694 0.68 0.181896
Target:  5'- uGGCAuCGCGGaCCGCCCGcaccucagcgcGGCgCGccuucUCGACc -3'
miRNA:   3'- -UCGU-GCGCC-GGCGGGC-----------CCG-GC-----AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 11960 0.68 0.168658
Target:  5'- cGCGCGgGGCuacCGCCCugcccacaccgGGGCUGUCGcCc -3'
miRNA:   3'- uCGUGCgCCG---GCGGG-----------CCCGGCAGCuG- -5'
18763 3' -66.2 NC_004683.1 + 12105 0.66 0.262538
Target:  5'- uAGCcccGCGCGGgCGCgCuGGCCcgcGUCGAUa -3'
miRNA:   3'- -UCG---UGCGCCgGCGgGcCCGG---CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 12242 0.68 0.186509
Target:  5'- gAGCGCccgGCGuGCCgauGCCCGGcGCUGguggCGGCa -3'
miRNA:   3'- -UCGUG---CGC-CGG---CGGGCC-CGGCa---GCUG- -5'
18763 3' -66.2 NC_004683.1 + 12638 0.69 0.141075
Target:  5'- uGGC-CGCGgcGCCGCugCUGGGCCcgcuGUCGGCg -3'
miRNA:   3'- -UCGuGCGC--CGGCG--GGCCCGG----CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 12707 0.66 0.248506
Target:  5'- cGGCGcCGCGGCCagGCUggcgacgaaucgcaCGaGGuuGUCGGCg -3'
miRNA:   3'- -UCGU-GCGCCGG--CGG--------------GC-CCggCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 12935 0.67 0.195559
Target:  5'- uGCuCGaCGGCCGCCCcaccgguGGCCGgucucugUCGACc -3'
miRNA:   3'- uCGuGC-GCCGGCGGGc------CCGGC-------AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 13112 0.69 0.144746
Target:  5'- cGCG-GCGGCUGCCCggagGGGCa-UCGGCg -3'
miRNA:   3'- uCGUgCGCCGGCGGG----CCCGgcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 13489 0.67 0.191226
Target:  5'- gAGCGCGaacggGGCCGCCugCGGGCCacccUGGCc -3'
miRNA:   3'- -UCGUGCg----CCGGCGG--GCCCGGca--GCUG- -5'
18763 3' -66.2 NC_004683.1 + 17297 0.67 0.216401
Target:  5'- uGUACGgGGgCGCCgGGGUCGgcaccaugaccUCGAUg -3'
miRNA:   3'- uCGUGCgCCgGCGGgCCCGGC-----------AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 17535 0.67 0.206006
Target:  5'- cGGuCACGCGGCguguauCGCCaCGGGgUGuucUCGACg -3'
miRNA:   3'- -UC-GUGCGCCG------GCGG-GCCCgGC---AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 17743 0.67 0.200972
Target:  5'- cGGCAuCGcCGGCCuggucaagggcGaCCCGGGCCcGUgGACc -3'
miRNA:   3'- -UCGU-GC-GCCGG-----------C-GGGCCCGG-CAgCUG- -5'
18763 3' -66.2 NC_004683.1 + 18657 0.68 0.181896
Target:  5'- cGCACGaacagcagcaGGUCGCCCGG--UGUCGGCa -3'
miRNA:   3'- uCGUGCg---------CCGGCGGGCCcgGCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 18892 0.67 0.216401
Target:  5'- cGCAgGaGGCgGCCCGGGaguucgugcgcaCCGUCGuGCa -3'
miRNA:   3'- uCGUgCgCCGgCGGGCCC------------GGCAGC-UG- -5'
18763 3' -66.2 NC_004683.1 + 19225 0.67 0.221223
Target:  5'- -cCugGUGGCCGCcgCCGGGUcgaacgcggugcgCGUCGAg -3'
miRNA:   3'- ucGugCGCCGGCG--GGCCCG-------------GCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 20399 0.71 0.100558
Target:  5'- cAGCugGCGGCgCaCCCGGGgCGgccaaCGGCg -3'
miRNA:   3'- -UCGugCGCCG-GcGGGCCCgGCa----GCUG- -5'
18763 3' -66.2 NC_004683.1 + 21621 0.68 0.177384
Target:  5'- cGGCugG-GGCgGCaaCUGGGCCGUCuACa -3'
miRNA:   3'- -UCGugCgCCGgCG--GGCCCGGCAGcUG- -5'
18763 3' -66.2 NC_004683.1 + 21888 0.67 0.221764
Target:  5'- uAGCGuucUGCccaccaacGCCGCCCGuGGCCGUaccCGACc -3'
miRNA:   3'- -UCGU---GCGc-------CGGCGGGC-CCGGCA---GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.