miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18763 3' -66.2 NC_004683.1 + 247 0.66 0.232832
Target:  5'- ----gGCGGCUGCUgGGG-UGUCGACg -3'
miRNA:   3'- ucgugCGCCGGCGGgCCCgGCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 248 0.67 0.221764
Target:  5'- cGC-CGCuGCUGCCCgcggcgGGGCUGgucgCGACg -3'
miRNA:   3'- uCGuGCGcCGGCGGG------CCCGGCa---GCUG- -5'
18763 3' -66.2 NC_004683.1 + 428 0.66 0.24436
Target:  5'- cGCAgGCGGUgGCUggCGcGGCgGUCGAg -3'
miRNA:   3'- uCGUgCGCCGgCGG--GC-CCGgCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 1007 0.68 0.186509
Target:  5'- -aCGCGCuGGCCaUCCGGGCaCGccuUCGACg -3'
miRNA:   3'- ucGUGCG-CCGGcGGGCCCG-GC---AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 1273 0.66 0.232832
Target:  5'- aAGCGCGaguacaucaucaUGGCCaaCCCGcaGGCCgGUCGACg -3'
miRNA:   3'- -UCGUGC------------GCCGGc-GGGC--CCGG-CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 1662 0.73 0.071197
Target:  5'- uGGCgACGuuGCCGCCgCGGGCCGcCGGg -3'
miRNA:   3'- -UCG-UGCgcCGGCGG-GCCCGGCaGCUg -5'
18763 3' -66.2 NC_004683.1 + 1701 0.67 0.199483
Target:  5'- cGGCGCGCuGCUGCCUGaccucaagaagcucGGCUucgagGUCGGCg -3'
miRNA:   3'- -UCGUGCGcCGGCGGGC--------------CCGG-----CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 1766 0.68 0.16444
Target:  5'- cAGCGCGcCGGCCGCgCUGcGaUCGUCGAg -3'
miRNA:   3'- -UCGUGC-GCCGGCG-GGC-CcGGCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 1988 0.7 0.117681
Target:  5'- uGCACGCGuggagacuGCCGCaCC-GGCUGUCGAg -3'
miRNA:   3'- uCGUGCGC--------CGGCG-GGcCCGGCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 2746 0.68 0.177384
Target:  5'- uGGUGCGCGGCgGCCgCGGcgaGCuCGgCGGCg -3'
miRNA:   3'- -UCGUGCGCCGgCGG-GCC---CG-GCaGCUG- -5'
18763 3' -66.2 NC_004683.1 + 3551 0.66 0.261914
Target:  5'- aAGCACaccggccugaccaGCGuucaacucuuGCCGCCCGGcGUguccgCGUCGGCg -3'
miRNA:   3'- -UCGUG-------------CGC----------CGGCGGGCC-CG-----GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 4662 0.67 0.205498
Target:  5'- gGGCaaGCGUGGCCcgaucugGCCCgucauGGGCgCGUCGGa -3'
miRNA:   3'- -UCG--UGCGCCGG-------CGGG-----CCCG-GCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 4882 0.66 0.262537
Target:  5'- gAGCGCGCcGCCgaacugGCCCGcGuCCGaUCGACu -3'
miRNA:   3'- -UCGUGCGcCGG------CGGGCcC-GGC-AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 5111 0.68 0.168658
Target:  5'- gGGCGaGCuGCgUGCCCGGGCgcUGUCGGCc -3'
miRNA:   3'- -UCGUgCGcCG-GCGGGCCCG--GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 6818 1.08 0.000131
Target:  5'- cAGCACGCGGCCGCCCGGGCCGUCGACu -3'
miRNA:   3'- -UCGUGCGCCGGCGGGCCCGGCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 6855 0.66 0.260672
Target:  5'- gGGCACGCuuaccaagcccuacGGCCGCUgGacGGCgCG-CGACg -3'
miRNA:   3'- -UCGUGCG--------------CCGGCGGgC--CCG-GCaGCUG- -5'
18763 3' -66.2 NC_004683.1 + 6957 0.66 0.262538
Target:  5'- cGCcguCGCGcGCCGUCCaGcGGCCGUagGGCu -3'
miRNA:   3'- uCGu--GCGC-CGGCGGG-C-CCGGCAg-CUG- -5'
18763 3' -66.2 NC_004683.1 + 7452 0.67 0.211148
Target:  5'- gAGCGCcucCGGgUGCUCGGuGCCGUCGu- -3'
miRNA:   3'- -UCGUGc--GCCgGCGGGCC-CGGCAGCug -5'
18763 3' -66.2 NC_004683.1 + 8244 0.67 0.221764
Target:  5'- uGGC-CGCGGCC-UUCGcGGCC-UCGGCg -3'
miRNA:   3'- -UCGuGCGCCGGcGGGC-CCGGcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 8470 0.66 0.24436
Target:  5'- gGGCuggauCGCGGcCCGCgCgGGGCCGaUCa-- -3'
miRNA:   3'- -UCGu----GCGCC-GGCG-GgCCCGGC-AGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.