miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18763 3' -66.2 NC_004683.1 + 12242 0.68 0.186509
Target:  5'- gAGCGCccgGCGuGCCgauGCCCGGcGCUGguggCGGCa -3'
miRNA:   3'- -UCGUG---CGC-CGG---CGGGCC-CGGCa---GCUG- -5'
18763 3' -66.2 NC_004683.1 + 52215 0.69 0.161956
Target:  5'- aGGCcguCGuCGGUCGgguccgccucggcgaCCCGGGCCGgcgCGGCa -3'
miRNA:   3'- -UCGu--GC-GCCGGC---------------GGGCCCGGCa--GCUG- -5'
18763 3' -66.2 NC_004683.1 + 5111 0.68 0.168658
Target:  5'- gGGCGaGCuGCgUGCCCGGGCgcUGUCGGCc -3'
miRNA:   3'- -UCGUgCGcCG-GCGGGCCCG--GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 11960 0.68 0.168658
Target:  5'- cGCGCGgGGCuacCGCCCugcccacaccgGGGCUGUCGcCc -3'
miRNA:   3'- uCGUGCgCCG---GCGGG-----------CCCGGCAGCuG- -5'
18763 3' -66.2 NC_004683.1 + 43133 0.68 0.168658
Target:  5'- cGGCGUGCGGCUGCgU-GGCCGgaUCGACu -3'
miRNA:   3'- -UCGUGCGCCGGCGgGcCCGGC--AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 51412 0.68 0.177384
Target:  5'- cGCACGUGucGCgGCCUGGGCUGagcagaUCGAg -3'
miRNA:   3'- uCGUGCGC--CGgCGGGCCCGGC------AGCUg -5'
18763 3' -66.2 NC_004683.1 + 2746 0.68 0.177384
Target:  5'- uGGUGCGCGGCgGCCgCGGcgaGCuCGgCGGCg -3'
miRNA:   3'- -UCGUGCGCCGgCGG-GCC---CG-GCaGCUG- -5'
18763 3' -66.2 NC_004683.1 + 25273 0.68 0.177384
Target:  5'- cGCACuGCuGGCCGCgcugCCGGGCCugcaGGCg -3'
miRNA:   3'- uCGUG-CG-CCGGCG----GGCCCGGcag-CUG- -5'
18763 3' -66.2 NC_004683.1 + 21621 0.68 0.177384
Target:  5'- cGGCugG-GGCgGCaaCUGGGCCGUCuACa -3'
miRNA:   3'- -UCGugCgCCGgCG--GGCCCGGCAGcUG- -5'
18763 3' -66.2 NC_004683.1 + 13112 0.69 0.144746
Target:  5'- cGCG-GCGGCUGCCCggagGGGCa-UCGGCg -3'
miRNA:   3'- uCGUgCGCCGGCGGG----CCCGgcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 50516 0.69 0.144746
Target:  5'- gGGaCGCGCGGCUgguGCUaaaGGGCCucgagucguauGUCGACg -3'
miRNA:   3'- -UC-GUGCGCCGG---CGGg--CCCGG-----------CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 24368 0.69 0.144746
Target:  5'- aGGcCACGCGGUCGCgaucaCCGGuGUCuUCGACg -3'
miRNA:   3'- -UC-GUGCGCCGGCG-----GGCC-CGGcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 42581 0.72 0.088112
Target:  5'- cGCGcCGCGGCgGUCgGGGCCGgucgucCGGCu -3'
miRNA:   3'- uCGU-GCGCCGgCGGgCCCGGCa-----GCUG- -5'
18763 3' -66.2 NC_004683.1 + 54388 0.71 0.096915
Target:  5'- cGCAUGCccGGCCGCaacguccuguuggCGGGCCugGUCGACg -3'
miRNA:   3'- uCGUGCG--CCGGCGg------------GCCCGG--CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 20399 0.71 0.100558
Target:  5'- cAGCugGCGGCgCaCCCGGGgCGgccaaCGGCg -3'
miRNA:   3'- -UCGugCGCCG-GcGGGCCCgGCa----GCUG- -5'
18763 3' -66.2 NC_004683.1 + 1988 0.7 0.117681
Target:  5'- uGCACGCGuggagacuGCCGCaCC-GGCUGUCGAg -3'
miRNA:   3'- uCGUGCGC--------CGGCG-GGcCCGGCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 30786 0.7 0.120787
Target:  5'- cGGCuGCGCacGCCGCCCGGaacGCCGUCa-- -3'
miRNA:   3'- -UCG-UGCGc-CGGCGGGCC---CGGCAGcug -5'
18763 3' -66.2 NC_004683.1 + 25548 0.7 0.127229
Target:  5'- cGGcCugGUcGCCGCCCuGGCCGcggUCGGCa -3'
miRNA:   3'- -UC-GugCGcCGGCGGGcCCGGC---AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 51117 0.69 0.137489
Target:  5'- cGGgGCGCGGCCGgCgcgaaGGGCCGcaaggcCGACu -3'
miRNA:   3'- -UCgUGCGCCGGCgGg----CCCGGCa-----GCUG- -5'
18763 3' -66.2 NC_004683.1 + 12638 0.69 0.141075
Target:  5'- uGGC-CGCGgcGCCGCugCUGGGCCcgcuGUCGGCg -3'
miRNA:   3'- -UCGuGCGC--CGGCG--GGCCCGG----CAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.