Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18763 | 3' | -66.2 | NC_004683.1 | + | 6818 | 1.08 | 0.000131 |
Target: 5'- cAGCACGCGGCCGCCCGGGCCGUCGACu -3' miRNA: 3'- -UCGUGCGCCGGCGGGCCCGGCAGCUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 9480 | 0.68 | 0.168658 |
Target: 5'- gGGCG-GCGGCCucCCCGGGCCGa---- -3' miRNA: 3'- -UCGUgCGCCGGc-GGGCCCGGCagcug -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 10694 | 0.68 | 0.181896 |
Target: 5'- uGGCAuCGCGGaCCGCCCGcaccucagcgcGGCgCGccuucUCGACc -3' miRNA: 3'- -UCGU-GCGCC-GGCGGGC-----------CCG-GC-----AGCUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 6957 | 0.66 | 0.262538 |
Target: 5'- cGCcguCGCGcGCCGUCCaGcGGCCGUagGGCu -3' miRNA: 3'- uCGu--GCGC-CGGCGGG-C-CCGGCAg-CUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 8611 | 0.74 | 0.067482 |
Target: 5'- cGGUGCgGUGGCCGCCCugcagucGGuuGUCGACg -3' miRNA: 3'- -UCGUG-CGCCGGCGGGc------CCggCAGCUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 1662 | 0.73 | 0.071197 |
Target: 5'- uGGCgACGuuGCCGCCgCGGGCCGcCGGg -3' miRNA: 3'- -UCG-UGCgcCGGCGG-GCCCGGCaGCUg -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 40163 | 0.72 | 0.088112 |
Target: 5'- aGGCGCGCuGG--GCCCGGGCgaacagcgCGUCGACg -3' miRNA: 3'- -UCGUGCG-CCggCGGGCCCG--------GCAGCUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 24726 | 0.72 | 0.092904 |
Target: 5'- aGGCGCGCgaacucGGCgGCCUGGGCgccggugaCGUCGAg -3' miRNA: 3'- -UCGUGCG------CCGgCGGGCCCG--------GCAGCUg -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 41012 | 0.69 | 0.137489 |
Target: 5'- cGGCgGCGCGGUcagcucggCGCCCGGGUCGgaucCGGg -3' miRNA: 3'- -UCG-UGCGCCG--------GCGGGCCCGGCa---GCUg -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 40304 | 0.68 | 0.16444 |
Target: 5'- cGGCGCG-GGCCuGCUCGGcGUCGUaGGCa -3' miRNA: 3'- -UCGUGCgCCGG-CGGGCC-CGGCAgCUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 42731 | 0.69 | 0.156289 |
Target: 5'- gGGCACacucaucgGCGGCCGCCgaucucgucgCGGGCguCGUCG-Cg -3' miRNA: 3'- -UCGUG--------CGCCGGCGG----------GCCCG--GCAGCuG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 46690 | 0.69 | 0.137489 |
Target: 5'- gGGCGCgGCGGCCuuGCCguCGcGGCCcUCGACc -3' miRNA: 3'- -UCGUG-CGCCGG--CGG--GC-CCGGcAGCUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 54240 | 0.78 | 0.029908 |
Target: 5'- gAGCGCGCGGCCGUugaCCuuuGGCCGcUCGGCg -3' miRNA: 3'- -UCGUGCGCCGGCG---GGc--CCGGC-AGCUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 41046 | 0.68 | 0.16444 |
Target: 5'- uGCGCGCGGCCaGgUCGGcGUgGcCGACg -3' miRNA: 3'- uCGUGCGCCGG-CgGGCC-CGgCaGCUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 44858 | 0.76 | 0.043101 |
Target: 5'- gGGCACGCGGcCCGCcgccgCCGGGUCGUagguuuggaucucggCGACg -3' miRNA: 3'- -UCGUGCGCC-GGCG-----GGCCCGGCA---------------GCUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 46397 | 0.7 | 0.117681 |
Target: 5'- cGCACGuCGGgcacaCCGCCuCGGGCCG-CGuCa -3' miRNA: 3'- uCGUGC-GCC-----GGCGG-GCCCGGCaGCuG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 1766 | 0.68 | 0.16444 |
Target: 5'- cAGCGCGcCGGCCGCgCUGcGaUCGUCGAg -3' miRNA: 3'- -UCGUGC-GCCGGCG-GGC-CcGGCAGCUg -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 52318 | 0.68 | 0.172972 |
Target: 5'- uGC-CGC-GCCgGCCCGGGUCGcCGAg -3' miRNA: 3'- uCGuGCGcCGG-CGGGCCCGGCaGCUg -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 28728 | 0.75 | 0.052959 |
Target: 5'- cGGCACGCcgagcGCCGCCaagucucGGCCGUCGGCc -3' miRNA: 3'- -UCGUGCGc----CGGCGGgc-----CCGGCAGCUG- -5' |
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18763 | 3' | -66.2 | NC_004683.1 | + | 53838 | 0.72 | 0.085577 |
Target: 5'- cGUugGCGaGCCGUgcaguccagcugaUCGGGCCgGUCGGCg -3' miRNA: 3'- uCGugCGC-CGGCG-------------GGCCCGG-CAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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