miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18763 3' -66.2 NC_004683.1 + 6818 1.08 0.000131
Target:  5'- cAGCACGCGGCCGCCCGGGCCGUCGACu -3'
miRNA:   3'- -UCGUGCGCCGGCGGGCCCGGCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 37839 0.85 0.009154
Target:  5'- gGGCuugugACGCGGCCGCCUGGGUguCGUCGGCg -3'
miRNA:   3'- -UCG-----UGCGCCGGCGGGCCCG--GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 54240 0.78 0.029908
Target:  5'- gAGCGCGCGGCCGUugaCCuuuGGCCGcUCGGCg -3'
miRNA:   3'- -UCGUGCGCCGGCG---GGc--CCGGC-AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 44858 0.76 0.043101
Target:  5'- gGGCACGCGGcCCGCcgccgCCGGGUCGUagguuuggaucucggCGACg -3'
miRNA:   3'- -UCGUGCGCC-GGCG-----GGCCCGGCA---------------GCUG- -5'
18763 3' -66.2 NC_004683.1 + 28728 0.75 0.052959
Target:  5'- cGGCACGCcgagcGCCGCCaagucucGGCCGUCGGCc -3'
miRNA:   3'- -UCGUGCGc----CGGCGGgc-----CCGGCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 8611 0.74 0.067482
Target:  5'- cGGUGCgGUGGCCGCCCugcagucGGuuGUCGACg -3'
miRNA:   3'- -UCGUG-CGCCGGCGGGc------CCggCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 1662 0.73 0.071197
Target:  5'- uGGCgACGuuGCCGCCgCGGGCCGcCGGg -3'
miRNA:   3'- -UCG-UGCgcCGGCGG-GCCCGGCaGCUg -5'
18763 3' -66.2 NC_004683.1 + 53838 0.72 0.085577
Target:  5'- cGUugGCGaGCCGUgcaguccagcugaUCGGGCCgGUCGGCg -3'
miRNA:   3'- uCGugCGC-CGGCG-------------GGCCCGG-CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 42581 0.72 0.088112
Target:  5'- cGCGcCGCGGCgGUCgGGGCCGgucgucCGGCu -3'
miRNA:   3'- uCGU-GCGCCGgCGGgCCCGGCa-----GCUG- -5'
18763 3' -66.2 NC_004683.1 + 40163 0.72 0.088112
Target:  5'- aGGCGCGCuGG--GCCCGGGCgaacagcgCGUCGACg -3'
miRNA:   3'- -UCGUGCG-CCggCGGGCCCG--------GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 24726 0.72 0.092904
Target:  5'- aGGCGCGCgaacucGGCgGCCUGGGCgccggugaCGUCGAg -3'
miRNA:   3'- -UCGUGCG------CCGgCGGGCCCG--------GCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 54388 0.71 0.096915
Target:  5'- cGCAUGCccGGCCGCaacguccuguuggCGGGCCugGUCGACg -3'
miRNA:   3'- uCGUGCG--CCGGCGg------------GCCCGG--CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 20399 0.71 0.100558
Target:  5'- cAGCugGCGGCgCaCCCGGGgCGgccaaCGGCg -3'
miRNA:   3'- -UCGugCGCCG-GcGGGCCCgGCa----GCUG- -5'
18763 3' -66.2 NC_004683.1 + 46397 0.7 0.117681
Target:  5'- cGCACGuCGGgcacaCCGCCuCGGGCCG-CGuCa -3'
miRNA:   3'- uCGUGC-GCC-----GGCGG-GCCCGGCaGCuG- -5'
18763 3' -66.2 NC_004683.1 + 1988 0.7 0.117681
Target:  5'- uGCACGCGuggagacuGCCGCaCC-GGCUGUCGAg -3'
miRNA:   3'- uCGUGCGC--------CGGCG-GGcCCGGCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 30786 0.7 0.120787
Target:  5'- cGGCuGCGCacGCCGCCCGGaacGCCGUCa-- -3'
miRNA:   3'- -UCG-UGCGc-CGGCGGGCC---CGGCAGcug -5'
18763 3' -66.2 NC_004683.1 + 25548 0.7 0.127229
Target:  5'- cGGcCugGUcGCCGCCCuGGCCGcggUCGGCa -3'
miRNA:   3'- -UC-GugCGcCGGCGGGcCCGGC---AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 41012 0.69 0.137489
Target:  5'- cGGCgGCGCGGUcagcucggCGCCCGGGUCGgaucCGGg -3'
miRNA:   3'- -UCG-UGCGCCG--------GCGGGCCCGGCa---GCUg -5'
18763 3' -66.2 NC_004683.1 + 51117 0.69 0.137489
Target:  5'- cGGgGCGCGGCCGgCgcgaaGGGCCGcaaggcCGACu -3'
miRNA:   3'- -UCgUGCGCCGGCgGg----CCCGGCa-----GCUG- -5'
18763 3' -66.2 NC_004683.1 + 46690 0.69 0.137489
Target:  5'- gGGCGCgGCGGCCuuGCCguCGcGGCCcUCGACc -3'
miRNA:   3'- -UCGUG-CGCCGG--CGG--GC-CCGGcAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.