miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18763 3' -66.2 NC_004683.1 + 12638 0.69 0.141075
Target:  5'- uGGC-CGCGgcGCCGCugCUGGGCCcgcuGUCGGCg -3'
miRNA:   3'- -UCGuGCGC--CGGCG--GGCCCGG----CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 24368 0.69 0.144746
Target:  5'- aGGcCACGCGGUCGCgaucaCCGGuGUCuUCGACg -3'
miRNA:   3'- -UC-GUGCGCCGGCG-----GGCC-CGGcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 50516 0.69 0.144746
Target:  5'- gGGaCGCGCGGCUgguGCUaaaGGGCCucgagucguauGUCGACg -3'
miRNA:   3'- -UC-GUGCGCCGG---CGGg--CCCGG-----------CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 13112 0.69 0.144746
Target:  5'- cGCG-GCGGCUGCCCggagGGGCa-UCGGCg -3'
miRNA:   3'- uCGUgCGCCGGCGGG----CCCGgcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 52694 0.69 0.153916
Target:  5'- uGCugGCacGGCCcgcaguacucgggugGCUCGGGCCgGUUGACc -3'
miRNA:   3'- uCGugCG--CCGG---------------CGGGCCCGG-CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 42731 0.69 0.156289
Target:  5'- gGGCACacucaucgGCGGCCGCCgaucucgucgCGGGCguCGUCG-Cg -3'
miRNA:   3'- -UCGUG--------CGCCGGCGG----------GCCCG--GCAGCuG- -5'
18763 3' -66.2 NC_004683.1 + 52215 0.69 0.161956
Target:  5'- aGGCcguCGuCGGUCGgguccgccucggcgaCCCGGGCCGgcgCGGCa -3'
miRNA:   3'- -UCGu--GC-GCCGGC---------------GGGCCCGGCa--GCUG- -5'
18763 3' -66.2 NC_004683.1 + 1766 0.68 0.16444
Target:  5'- cAGCGCGcCGGCCGCgCUGcGaUCGUCGAg -3'
miRNA:   3'- -UCGUGC-GCCGGCG-GGC-CcGGCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 41046 0.68 0.16444
Target:  5'- uGCGCGCGGCCaGgUCGGcGUgGcCGACg -3'
miRNA:   3'- uCGUGCGCCGG-CgGGCC-CGgCaGCUG- -5'
18763 3' -66.2 NC_004683.1 + 40304 0.68 0.16444
Target:  5'- cGGCGCG-GGCCuGCUCGGcGUCGUaGGCa -3'
miRNA:   3'- -UCGUGCgCCGG-CGGGCC-CGGCAgCUG- -5'
18763 3' -66.2 NC_004683.1 + 43133 0.68 0.168658
Target:  5'- cGGCGUGCGGCUGCgU-GGCCGgaUCGACu -3'
miRNA:   3'- -UCGUGCGCCGGCGgGcCCGGC--AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 5111 0.68 0.168658
Target:  5'- gGGCGaGCuGCgUGCCCGGGCgcUGUCGGCc -3'
miRNA:   3'- -UCGUgCGcCG-GCGGGCCCG--GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 11960 0.68 0.168658
Target:  5'- cGCGCGgGGCuacCGCCCugcccacaccgGGGCUGUCGcCc -3'
miRNA:   3'- uCGUGCgCCG---GCGGG-----------CCCGGCAGCuG- -5'
18763 3' -66.2 NC_004683.1 + 9480 0.68 0.168658
Target:  5'- gGGCG-GCGGCCucCCCGGGCCGa---- -3'
miRNA:   3'- -UCGUgCGCCGGc-GGGCCCGGCagcug -5'
18763 3' -66.2 NC_004683.1 + 52318 0.68 0.172972
Target:  5'- uGC-CGC-GCCgGCCCGGGUCGcCGAg -3'
miRNA:   3'- uCGuGCGcCGG-CGGGCCCGGCaGCUg -5'
18763 3' -66.2 NC_004683.1 + 2746 0.68 0.177384
Target:  5'- uGGUGCGCGGCgGCCgCGGcgaGCuCGgCGGCg -3'
miRNA:   3'- -UCGUGCGCCGgCGG-GCC---CG-GCaGCUG- -5'
18763 3' -66.2 NC_004683.1 + 25273 0.68 0.177384
Target:  5'- cGCACuGCuGGCCGCgcugCCGGGCCugcaGGCg -3'
miRNA:   3'- uCGUG-CG-CCGGCG----GGCCCGGcag-CUG- -5'
18763 3' -66.2 NC_004683.1 + 21621 0.68 0.177384
Target:  5'- cGGCugG-GGCgGCaaCUGGGCCGUCuACa -3'
miRNA:   3'- -UCGugCgCCGgCG--GGCCCGGCAGcUG- -5'
18763 3' -66.2 NC_004683.1 + 51412 0.68 0.177384
Target:  5'- cGCACGUGucGCgGCCUGGGCUGagcagaUCGAg -3'
miRNA:   3'- uCGUGCGC--CGgCGGGCCCGGC------AGCUg -5'
18763 3' -66.2 NC_004683.1 + 10694 0.68 0.181896
Target:  5'- uGGCAuCGCGGaCCGCCCGcaccucagcgcGGCgCGccuucUCGACc -3'
miRNA:   3'- -UCGU-GCGCC-GGCGGGC-----------CCG-GC-----AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.