miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18763 3' -66.2 NC_004683.1 + 44398 0.66 0.226688
Target:  5'- gAGCGCcuGCGacugugacaggucGgUGCCCGGGCgauCGUCGGCg -3'
miRNA:   3'- -UCGUG--CGC-------------CgGCGGGCCCG---GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 21888 0.67 0.221764
Target:  5'- uAGCGuucUGCccaccaacGCCGCCCGuGGCCGUaccCGACc -3'
miRNA:   3'- -UCGU---GCGc-------CGGCGGGC-CCGGCA---GCUG- -5'
18763 3' -66.2 NC_004683.1 + 8244 0.67 0.221764
Target:  5'- uGGC-CGCGGCC-UUCGcGGCC-UCGGCg -3'
miRNA:   3'- -UCGuGCGCCGGcGGGC-CCGGcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 248 0.67 0.221764
Target:  5'- cGC-CGCuGCUGCCCgcggcgGGGCUGgucgCGACg -3'
miRNA:   3'- uCGuGCGcCGGCGGG------CCCGGCa---GCUG- -5'
18763 3' -66.2 NC_004683.1 + 19225 0.67 0.221223
Target:  5'- -cCugGUGGCCGCcgCCGGGUcgaacgcggugcgCGUCGAg -3'
miRNA:   3'- ucGugCGCCGGCG--GGCCCG-------------GCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 45279 0.67 0.218533
Target:  5'- gAGCGCGCGgucgaaucggugaacGCCGaacgaCCGGGCaaCGUCGcuGCg -3'
miRNA:   3'- -UCGUGCGC---------------CGGCg----GGCCCG--GCAGC--UG- -5'
18763 3' -66.2 NC_004683.1 + 18892 0.67 0.216401
Target:  5'- cGCAgGaGGCgGCCCGGGaguucgugcgcaCCGUCGuGCa -3'
miRNA:   3'- uCGUgCgCCGgCGGGCCC------------GGCAGC-UG- -5'
18763 3' -66.2 NC_004683.1 + 17297 0.67 0.216401
Target:  5'- uGUACGgGGgCGCCgGGGUCGgcaccaugaccUCGAUg -3'
miRNA:   3'- uCGUGCgCCgGCGGgCCCGGC-----------AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 7452 0.67 0.211148
Target:  5'- gAGCGCcucCGGgUGCUCGGuGCCGUCGu- -3'
miRNA:   3'- -UCGUGc--GCCgGCGGGCC-CGGCAGCug -5'
18763 3' -66.2 NC_004683.1 + 17535 0.67 0.206006
Target:  5'- cGGuCACGCGGCguguauCGCCaCGGGgUGuucUCGACg -3'
miRNA:   3'- -UC-GUGCGCCG------GCGG-GCCCgGC---AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 44944 0.67 0.206006
Target:  5'- cGGCACuCGGCCuccaGgCCGGGCCaccaCGGCg -3'
miRNA:   3'- -UCGUGcGCCGG----CgGGCCCGGca--GCUG- -5'
18763 3' -66.2 NC_004683.1 + 51548 0.67 0.205498
Target:  5'- cGGCAgGCGcGCCGCCagCgcacgcagaacgaGGGCC-UCGACg -3'
miRNA:   3'- -UCGUgCGC-CGGCGG--G-------------CCCGGcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 4662 0.67 0.205498
Target:  5'- gGGCaaGCGUGGCCcgaucugGCCCgucauGGGCgCGUCGGa -3'
miRNA:   3'- -UCG--UGCGCCGG-------CGGG-----CCCG-GCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 24195 0.67 0.200972
Target:  5'- uGC-CGCGGCUGCC---GUCGUCGACc -3'
miRNA:   3'- uCGuGCGCCGGCGGgccCGGCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 17743 0.67 0.200972
Target:  5'- cGGCAuCGcCGGCCuggucaagggcGaCCCGGGCCcGUgGACc -3'
miRNA:   3'- -UCGU-GC-GCCGG-----------C-GGGCCCGG-CAgCUG- -5'
18763 3' -66.2 NC_004683.1 + 53626 0.67 0.200972
Target:  5'- cGGCGCGaucaGGcCCGCCgCGaccuGGCCG-CGGCu -3'
miRNA:   3'- -UCGUGCg---CC-GGCGG-GC----CCGGCaGCUG- -5'
18763 3' -66.2 NC_004683.1 + 1701 0.67 0.199483
Target:  5'- cGGCGCGCuGCUGCCUGaccucaagaagcucGGCUucgagGUCGGCg -3'
miRNA:   3'- -UCGUGCGcCGGCGGGC--------------CCGG-----CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 51225 0.67 0.196046
Target:  5'- cGcCACGUGGCCGUCCagucGGCCuugCGGCc -3'
miRNA:   3'- uC-GUGCGCCGGCGGGc---CCGGca-GCUG- -5'
18763 3' -66.2 NC_004683.1 + 12935 0.67 0.195559
Target:  5'- uGCuCGaCGGCCGCCCcaccgguGGCCGgucucugUCGACc -3'
miRNA:   3'- uCGuGC-GCCGGCGGGc------CCGGC-------AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 38127 0.67 0.193141
Target:  5'- cGGCACGCGG-CGCCcgugcacaagcggaCauagcguccauggcGGGCCGUcCGACg -3'
miRNA:   3'- -UCGUGCGCCgGCGG--------------G--------------CCCGGCA-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.