miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18763 3' -66.2 NC_004683.1 + 54388 0.71 0.096915
Target:  5'- cGCAUGCccGGCCGCaacguccuguuggCGGGCCugGUCGACg -3'
miRNA:   3'- uCGUGCG--CCGGCGg------------GCCCGG--CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 54240 0.78 0.029908
Target:  5'- gAGCGCGCGGCCGUugaCCuuuGGCCGcUCGGCg -3'
miRNA:   3'- -UCGUGCGCCGGCG---GGc--CCGGC-AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 53838 0.72 0.085577
Target:  5'- cGUugGCGaGCCGUgcaguccagcugaUCGGGCCgGUCGGCg -3'
miRNA:   3'- uCGugCGC-CGGCG-------------GGCCCGG-CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 53626 0.67 0.200972
Target:  5'- cGGCGCGaucaGGcCCGCCgCGaccuGGCCG-CGGCu -3'
miRNA:   3'- -UCGUGCg---CC-GGCGG-GC----CCGGCaGCUG- -5'
18763 3' -66.2 NC_004683.1 + 53579 0.66 0.262537
Target:  5'- cGGCagACGcCGGCCGCaCCGccGGCCG-CGuCu -3'
miRNA:   3'- -UCG--UGC-GCCGGCG-GGC--CCGGCaGCuG- -5'
18763 3' -66.2 NC_004683.1 + 52694 0.69 0.153916
Target:  5'- uGCugGCacGGCCcgcaguacucgggugGCUCGGGCCgGUUGACc -3'
miRNA:   3'- uCGugCG--CCGG---------------CGGGCCCGG-CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 52318 0.68 0.172972
Target:  5'- uGC-CGC-GCCgGCCCGGGUCGcCGAg -3'
miRNA:   3'- uCGuGCGcCGG-CGGGCCCGGCaGCUg -5'
18763 3' -66.2 NC_004683.1 + 52215 0.69 0.161956
Target:  5'- aGGCcguCGuCGGUCGgguccgccucggcgaCCCGGGCCGgcgCGGCa -3'
miRNA:   3'- -UCGu--GC-GCCGGC---------------GGGCCCGGCa--GCUG- -5'
18763 3' -66.2 NC_004683.1 + 51638 0.66 0.256359
Target:  5'- gAGCcCGCGGUCGCgcugCCGGGguUCGUUGGu -3'
miRNA:   3'- -UCGuGCGCCGGCG----GGCCC--GGCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 51623 0.66 0.262538
Target:  5'- cGCugGCGGCgCGCCU--GCCGUgcgUGAUg -3'
miRNA:   3'- uCGugCGCCG-GCGGGccCGGCA---GCUG- -5'
18763 3' -66.2 NC_004683.1 + 51548 0.67 0.205498
Target:  5'- cGGCAgGCGcGCCGCCagCgcacgcagaacgaGGGCC-UCGACg -3'
miRNA:   3'- -UCGUgCGC-CGGCGG--G-------------CCCGGcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 51412 0.68 0.177384
Target:  5'- cGCACGUGucGCgGCCUGGGCUGagcagaUCGAg -3'
miRNA:   3'- uCGUGCGC--CGgCGGGCCCGGC------AGCUg -5'
18763 3' -66.2 NC_004683.1 + 51225 0.67 0.196046
Target:  5'- cGcCACGUGGCCGUCCagucGGCCuugCGGCc -3'
miRNA:   3'- uC-GUGCGCCGGCGGGc---CCGGca-GCUG- -5'
18763 3' -66.2 NC_004683.1 + 51117 0.69 0.137489
Target:  5'- cGGgGCGCGGCCGgCgcgaaGGGCCGcaaggcCGACu -3'
miRNA:   3'- -UCgUGCGCCGGCgGg----CCCGGCa-----GCUG- -5'
18763 3' -66.2 NC_004683.1 + 50516 0.69 0.144746
Target:  5'- gGGaCGCGCGGCUgguGCUaaaGGGCCucgagucguauGUCGACg -3'
miRNA:   3'- -UC-GUGCGCCGG---CGGg--CCCGG-----------CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 48542 0.66 0.256359
Target:  5'- cGGCAcCGUcacaaacgucgGGCUGCaCUGGGUgauCGUCGGCg -3'
miRNA:   3'- -UCGU-GCG-----------CCGGCG-GGCCCG---GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 47020 0.66 0.243773
Target:  5'- cAGCAgCGCGuGCCGCUccaccguCGuGCaCGUCGGCa -3'
miRNA:   3'- -UCGU-GCGC-CGGCGG-------GCcCG-GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 46690 0.69 0.137489
Target:  5'- gGGCGCgGCGGCCuuGCCguCGcGGCCcUCGACc -3'
miRNA:   3'- -UCGUG-CGCCGG--CGG--GC-CCGGcAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 46397 0.7 0.117681
Target:  5'- cGCACGuCGGgcacaCCGCCuCGGGCCG-CGuCa -3'
miRNA:   3'- uCGUGC-GCC-----GGCGG-GCCCGGCaGCuG- -5'
18763 3' -66.2 NC_004683.1 + 45279 0.67 0.218533
Target:  5'- gAGCGCGCGgucgaaucggugaacGCCGaacgaCCGGGCaaCGUCGcuGCg -3'
miRNA:   3'- -UCGUGCGC---------------CGGCg----GGCCCG--GCAGC--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.