miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18763 5' -52.5 NC_004683.1 + 22995 0.66 0.887867
Target:  5'- cCGUCGuUGAUCACcaGCGACACc-- -3'
miRNA:   3'- aGUAGCuACUAGUGccCGCUGUGcac -5'
18763 5' -52.5 NC_004683.1 + 47151 0.66 0.872525
Target:  5'- aUCcUCGAcgucGAUCGuCGGGUGGC-CGUGc -3'
miRNA:   3'- -AGuAGCUa---CUAGU-GCCCGCUGuGCAC- -5'
18763 5' -52.5 NC_004683.1 + 52143 0.66 0.872525
Target:  5'- gCGUCGAcGAUCAgccaGGGCGcgucggGCACGg- -3'
miRNA:   3'- aGUAGCUaCUAGUg---CCCGC------UGUGCac -5'
18763 5' -52.5 NC_004683.1 + 23472 0.66 0.867722
Target:  5'- cUCGUCGGUGccgcCGCGGGCguuguagagcgacucGACguagGCGUGg -3'
miRNA:   3'- -AGUAGCUACua--GUGCCCG---------------CUG----UGCAC- -5'
18763 5' -52.5 NC_004683.1 + 6460 0.67 0.847628
Target:  5'- gUCGUCGAacaGGUCGCcgGGGCGcaccacgcgggGCACGUu -3'
miRNA:   3'- -AGUAGCUa--CUAGUG--CCCGC-----------UGUGCAc -5'
18763 5' -52.5 NC_004683.1 + 39819 0.67 0.838858
Target:  5'- -gGUCGAUGAgUugGGGUc-CGCGUGa -3'
miRNA:   3'- agUAGCUACUaGugCCCGcuGUGCAC- -5'
18763 5' -52.5 NC_004683.1 + 22372 0.67 0.838858
Target:  5'- uUCAUUugcGAUCAUGGGCGAuucCACGg- -3'
miRNA:   3'- -AGUAGcuaCUAGUGCCCGCU---GUGCac -5'
18763 5' -52.5 NC_004683.1 + 21779 0.67 0.836183
Target:  5'- cCAcCGAUGGUuggucggguacggcCACGGGCGGcgUugGUGg -3'
miRNA:   3'- aGUaGCUACUA--------------GUGCCCGCU--GugCAC- -5'
18763 5' -52.5 NC_004683.1 + 28430 0.67 0.820662
Target:  5'- gUCAUCGAUGccgagcuGCGGGCGcuCGCGg- -3'
miRNA:   3'- -AGUAGCUACuag----UGCCCGCu-GUGCac -5'
18763 5' -52.5 NC_004683.1 + 42724 0.67 0.811256
Target:  5'- cUCAUCGgcGGccgccgaucucgUCGCGGGCGucguCGCGg- -3'
miRNA:   3'- -AGUAGCuaCU------------AGUGCCCGCu---GUGCac -5'
18763 5' -52.5 NC_004683.1 + 3967 0.67 0.811256
Target:  5'- -gAUCGAgccGAUCAUgGGGUGGCGgcCGUGg -3'
miRNA:   3'- agUAGCUa--CUAGUG-CCCGCUGU--GCAC- -5'
18763 5' -52.5 NC_004683.1 + 34757 0.67 0.810305
Target:  5'- aUCAgCGAaggaggaacuuguUGGUCACGaGCGugACGUGc -3'
miRNA:   3'- -AGUaGCU-------------ACUAGUGCcCGCugUGCAC- -5'
18763 5' -52.5 NC_004683.1 + 46785 0.68 0.801659
Target:  5'- uUCAUCGcgGAgUUGCGcGGCGGCGgGUc -3'
miRNA:   3'- -AGUAGCuaCU-AGUGC-CCGCUGUgCAc -5'
18763 5' -52.5 NC_004683.1 + 42517 0.68 0.791881
Target:  5'- gUCGUCaGGguuggGAUCGCGGucGgGAUACGUGa -3'
miRNA:   3'- -AGUAG-CUa----CUAGUGCC--CgCUGUGCAC- -5'
18763 5' -52.5 NC_004683.1 + 41403 0.68 0.771827
Target:  5'- aUCGUCGAcgccgucagccUGG--GCGGGUGGCGCGg- -3'
miRNA:   3'- -AGUAGCU-----------ACUagUGCCCGCUGUGCac -5'
18763 5' -52.5 NC_004683.1 + 15099 0.68 0.761574
Target:  5'- gCAUCGGUGcgCaagaucgccGCGGGCGACAa--- -3'
miRNA:   3'- aGUAGCUACuaG---------UGCCCGCUGUgcac -5'
18763 5' -52.5 NC_004683.1 + 16591 0.68 0.751186
Target:  5'- gCGUCGAUGu--GCGGGuCGACcUGUGg -3'
miRNA:   3'- aGUAGCUACuagUGCCC-GCUGuGCAC- -5'
18763 5' -52.5 NC_004683.1 + 21548 0.68 0.751186
Target:  5'- aCAUCGAcgUGAUCcuGCuGGGCGGCgGCGgUGg -3'
miRNA:   3'- aGUAGCU--ACUAG--UG-CCCGCUG-UGC-AC- -5'
18763 5' -52.5 NC_004683.1 + 45472 0.68 0.751186
Target:  5'- -gGUUGgcGGUCAgGGGUGGC-CGUGa -3'
miRNA:   3'- agUAGCuaCUAGUgCCCGCUGuGCAC- -5'
18763 5' -52.5 NC_004683.1 + 21688 0.69 0.730052
Target:  5'- aUCAUCaccggGGUGGUCgguGCGGGUGGCGC-UGg -3'
miRNA:   3'- -AGUAG-----CUACUAG---UGCCCGCUGUGcAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.