miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 25108 0.69 0.17397
Target:  5'- gGCCaacccggcggCGuuGCCGGUCcuGGCCGCCgucacCGGu -3'
miRNA:   3'- gCGG----------GCggCGGUCAG--CCGGCGGa----GCC- -5'
18764 3' -66 NC_004683.1 + 25529 0.66 0.269162
Target:  5'- aCGCCgUGCCGCUguggcucggccuGGUC-GCCGCCcUGGc -3'
miRNA:   3'- -GCGG-GCGGCGG------------UCAGcCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 25891 0.72 0.099098
Target:  5'- aGUUCGCCgGgCAGacgcUGGCCGCCUCGGu -3'
miRNA:   3'- gCGGGCGG-CgGUCa---GCCGGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 26203 0.69 0.161371
Target:  5'- gCGCUCGcCCGCCAgGUCGagaacGCCGCCgaacgCGa -3'
miRNA:   3'- -GCGGGC-GGCGGU-CAGC-----CGGCGGa----GCc -5'
18764 3' -66 NC_004683.1 + 26410 0.67 0.237976
Target:  5'- uCGCaCCGCCgacagcGCCGGUCGauuuccuuguaUGCCUCGGu -3'
miRNA:   3'- -GCG-GGCGG------CGGUCAGCcg---------GCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 26429 0.7 0.138616
Target:  5'- cCGCCggUGCCGCCgAGUUGGCCGCa---- -3'
miRNA:   3'- -GCGG--GCGGCGG-UCAGCCGGCGgagcc -5'
18764 3' -66 NC_004683.1 + 26961 0.68 0.182397
Target:  5'- gGUCCGCgcguacgcgugagCGCCGGgcaggcCGGCCaCCUCGGc -3'
miRNA:   3'- gCGGGCG-------------GCGGUCa-----GCCGGcGGAGCC- -5'
18764 3' -66 NC_004683.1 + 27539 0.67 0.244894
Target:  5'- aGCgCGCuCGCUg--CGGCUGCCUgCGGu -3'
miRNA:   3'- gCGgGCG-GCGGucaGCCGGCGGA-GCC- -5'
18764 3' -66 NC_004683.1 + 28724 0.78 0.033225
Target:  5'- aCGCCgagCGCCGCCAagucucggccGUCGGCCGCCaaaccuUCGGc -3'
miRNA:   3'- -GCGG---GCGGCGGU----------CAGCCGGCGG------AGCC- -5'
18764 3' -66 NC_004683.1 + 29562 0.66 0.269162
Target:  5'- gGUCCGacgguauuuCCGcCCGGUCGGCaaucaauuccggCGCCUCaGGa -3'
miRNA:   3'- gCGGGC---------GGC-GGUCAGCCG------------GCGGAG-CC- -5'
18764 3' -66 NC_004683.1 + 32512 0.66 0.262919
Target:  5'- aGCCggaCGUgGCgCAGacCGGCCGCCUUGa -3'
miRNA:   3'- gCGG---GCGgCG-GUCa-GCCGGCGGAGCc -5'
18764 3' -66 NC_004683.1 + 32632 0.73 0.091621
Target:  5'- uCGCCCaGCCGCaguuGGUCGGCaGCCU-GGa -3'
miRNA:   3'- -GCGGG-CGGCGg---UCAGCCGgCGGAgCC- -5'
18764 3' -66 NC_004683.1 + 33245 0.67 0.239117
Target:  5'- gGCCCGUUucccggcuaGCCAGUCGucGCaCGCUUCGcGg -3'
miRNA:   3'- gCGGGCGG---------CGGUCAGC--CG-GCGGAGC-C- -5'
18764 3' -66 NC_004683.1 + 40597 0.67 0.244894
Target:  5'- gGCCCGCCGa-GGg-GGgCGCCgugCGGg -3'
miRNA:   3'- gCGGGCGGCggUCagCCgGCGGa--GCC- -5'
18764 3' -66 NC_004683.1 + 40874 0.7 0.142193
Target:  5'- gGCCuCGCCGUCGgcgagcgcGUCGGUCGCggCGGu -3'
miRNA:   3'- gCGG-GCGGCGGU--------CAGCCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 40927 0.66 0.282007
Target:  5'- uCGCCCGCgaUGCaCAcUCGGCacuucgauggCGCCUCGu -3'
miRNA:   3'- -GCGGGCG--GCG-GUcAGCCG----------GCGGAGCc -5'
18764 3' -66 NC_004683.1 + 40945 0.67 0.222469
Target:  5'- cCGCgCCGCCguuGCCcGUCGGCCacGCCgaccUGGc -3'
miRNA:   3'- -GCG-GGCGG---CGGuCAGCCGG--CGGa---GCC- -5'
18764 3' -66 NC_004683.1 + 41046 0.67 0.227906
Target:  5'- uGCgCGCgGCCAgGUCGGCgugGCCgaCGGg -3'
miRNA:   3'- gCGgGCGgCGGU-CAGCCGg--CGGa-GCC- -5'
18764 3' -66 NC_004683.1 + 41100 0.66 0.269162
Target:  5'- cCGCgCCGCUGCCA--CGGCCgggGCCUUu- -3'
miRNA:   3'- -GCG-GGCGGCGGUcaGCCGG---CGGAGcc -5'
18764 3' -66 NC_004683.1 + 43011 0.66 0.250785
Target:  5'- uGCCCGUCG-CGGUCGGCUucuCCgaCGGc -3'
miRNA:   3'- gCGGGCGGCgGUCAGCCGGc--GGa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.