miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 10027 0.66 0.275525
Target:  5'- aGcCCCGCuCGUCA--CGGUCGCCgCGGu -3'
miRNA:   3'- gC-GGGCG-GCGGUcaGCCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 10043 0.68 0.19692
Target:  5'- aCG-CCGCCgaGCCGuUCGGCCGCggCGGc -3'
miRNA:   3'- -GCgGGCGG--CGGUcAGCCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 11865 0.66 0.262301
Target:  5'- cCGUCCGaUCGaCgAGUCGGCCaGCCacuccuugaacuuUCGGa -3'
miRNA:   3'- -GCGGGC-GGC-GgUCAGCCGG-CGG-------------AGCC- -5'
18764 3' -66 NC_004683.1 + 12793 0.68 0.210383
Target:  5'- gCGcCCCGCgCGCCGaggaugccgaggauGcCGuGcCCGCCUCGGa -3'
miRNA:   3'- -GC-GGGCG-GCGGU--------------CaGC-C-GGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 12880 0.66 0.262919
Target:  5'- uCGCCCGgguauCCGCCAG-CGGCguauccCGCCg-GGu -3'
miRNA:   3'- -GCGGGC-----GGCGGUCaGCCG------GCGGagCC- -5'
18764 3' -66 NC_004683.1 + 13353 0.66 0.28861
Target:  5'- aGCCUGCCcCCAGUCuccGGUgGCggCGGc -3'
miRNA:   3'- gCGGGCGGcGGUCAG---CCGgCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 13618 0.71 0.121942
Target:  5'- aGCUCGCCGgCA-UCGG-CGUCUCGGg -3'
miRNA:   3'- gCGGGCGGCgGUcAGCCgGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 14240 0.66 0.269162
Target:  5'- aGCaCUGCCGCaAGcUGuGCCGCCUCa- -3'
miRNA:   3'- gCG-GGCGGCGgUCaGC-CGGCGGAGcc -5'
18764 3' -66 NC_004683.1 + 15683 0.67 0.244894
Target:  5'- uGCCCGCgGCCacgaucuucgAGUCugcguuGCCGCCgUCGa -3'
miRNA:   3'- gCGGGCGgCGG----------UCAGc-----CGGCGG-AGCc -5'
18764 3' -66 NC_004683.1 + 19230 0.68 0.206818
Target:  5'- uGgCCGCCGCCGGgucgaacgCGGUgCGCgUCGa -3'
miRNA:   3'- gCgGGCGGCGGUCa-------GCCG-GCGgAGCc -5'
18764 3' -66 NC_004683.1 + 20385 0.73 0.086937
Target:  5'- aCGCgCUGCCGCC-GUC-GCCGCCcCGGc -3'
miRNA:   3'- -GCG-GGCGGCGGuCAGcCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 20497 0.8 0.025338
Target:  5'- cCGCCggUGCCGCC-GUUGGCCGCCcCGGg -3'
miRNA:   3'- -GCGG--GCGGCGGuCAGCCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 20620 0.67 0.222469
Target:  5'- cCGCCguUGCCGCCGGU--GCCGCCggugaucgugcCGGa -3'
miRNA:   3'- -GCGG--GCGGCGGUCAgcCGGCGGa----------GCC- -5'
18764 3' -66 NC_004683.1 + 21940 0.67 0.227906
Target:  5'- cCGCCCGgCGgUGGcgggCGGCCGCCgaguucacCGGc -3'
miRNA:   3'- -GCGGGCgGCgGUCa---GCCGGCGGa-------GCC- -5'
18764 3' -66 NC_004683.1 + 23163 0.66 0.262919
Target:  5'- aCGCCCacgagaGCgCGCCGGUgagcaccaGGCCGCCgagcaGGc -3'
miRNA:   3'- -GCGGG------CG-GCGGUCAg-------CCGGCGGag---CC- -5'
18764 3' -66 NC_004683.1 + 23484 0.72 0.099098
Target:  5'- aGUCCaGCCGCCcucGUCGguGCCGCCgCGGg -3'
miRNA:   3'- gCGGG-CGGCGGu--CAGC--CGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 23796 0.73 0.086937
Target:  5'- gGUgCCGCCGCCGGU--GCCGCCgcggCGGa -3'
miRNA:   3'- gCG-GGCGGCGGUCAgcCGGCGGa---GCC- -5'
18764 3' -66 NC_004683.1 + 24002 0.72 0.096543
Target:  5'- gGCCCGacgaUGCC-GUCGGCCGCCacgccuacgCGGc -3'
miRNA:   3'- gCGGGCg---GCGGuCAGCCGGCGGa--------GCC- -5'
18764 3' -66 NC_004683.1 + 24191 0.71 0.109965
Target:  5'- gCGCCUGCCGCUcaAGcUCGGCucauccgaCGCC-CGGg -3'
miRNA:   3'- -GCGGGCGGCGG--UC-AGCCG--------GCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 24643 0.66 0.28861
Target:  5'- gCGCCCagGCCGCCgAGUUcGCgCGCCUg-- -3'
miRNA:   3'- -GCGGG--CGGCGG-UCAGcCG-GCGGAgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.