miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 257 0.67 0.217143
Target:  5'- uGCCCGCgGCgGGgcuGGUCGCgaCGGu -3'
miRNA:   3'- gCGGGCGgCGgUCag-CCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 328 0.66 0.250785
Target:  5'- aGcCCCGCCGCgGGcagcagCGGCgGCaucgcggcgCUCGGa -3'
miRNA:   3'- gC-GGGCGGCGgUCa-----GCCGgCG---------GAGCC- -5'
18764 3' -66 NC_004683.1 + 646 0.76 0.053928
Target:  5'- cCGCCaaGUCGCacaGGUCGGCCaCCUCGGg -3'
miRNA:   3'- -GCGGg-CGGCGg--UCAGCCGGcGGAGCC- -5'
18764 3' -66 NC_004683.1 + 839 0.66 0.282007
Target:  5'- uCGUgCGCCGaCCAGgaaaUGaGCCGCUgcUCGGu -3'
miRNA:   3'- -GCGgGCGGC-GGUCa---GC-CGGCGG--AGCC- -5'
18764 3' -66 NC_004683.1 + 1351 0.72 0.107148
Target:  5'- uCGCUCGaucCCGCCgAGuUCGGCCgcgagcGCCUCGGc -3'
miRNA:   3'- -GCGGGC---GGCGG-UC-AGCCGG------CGGAGCC- -5'
18764 3' -66 NC_004683.1 + 2838 0.7 0.142193
Target:  5'- uGgCCGCCGCCgAGcucgccgCGGCCGCCgCGc -3'
miRNA:   3'- gCgGGCGGCGG-UCa------GCCGGCGGaGCc -5'
18764 3' -66 NC_004683.1 + 3344 0.66 0.287944
Target:  5'- uGCCCGUaguuugaguagguCGCCg--CGGCCaggcCCUCGGa -3'
miRNA:   3'- gCGGGCG-------------GCGGucaGCCGGc---GGAGCC- -5'
18764 3' -66 NC_004683.1 + 3553 0.68 0.201322
Target:  5'- aGCCCGCCGUUAuuagcguGUUGaUCGUCUCGGc -3'
miRNA:   3'- gCGGGCGGCGGU-------CAGCcGGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 3751 0.66 0.269162
Target:  5'- gGCCUGCCGCacacucucCAG-CGGCgGCCg-GGc -3'
miRNA:   3'- gCGGGCGGCG--------GUCaGCCGgCGGagCC- -5'
18764 3' -66 NC_004683.1 + 3851 0.66 0.275525
Target:  5'- cCGCgagUCGCCGCCcaaGGUgcaguucgaccaCGGCCGCCaccccaugaUCGGc -3'
miRNA:   3'- -GCG---GGCGGCGG---UCA------------GCCGGCGG---------AGCC- -5'
18764 3' -66 NC_004683.1 + 4050 0.67 0.239117
Target:  5'- aCGCgCGCUaCCAcGUgCGcGCCGCcCUCGGg -3'
miRNA:   3'- -GCGgGCGGcGGU-CA-GC-CGGCG-GAGCC- -5'
18764 3' -66 NC_004683.1 + 5833 0.66 0.275525
Target:  5'- aGCUCGCCGCgCGGcaccGCCGCCaaGGc -3'
miRNA:   3'- gCGGGCGGCG-GUCagc-CGGCGGagCC- -5'
18764 3' -66 NC_004683.1 + 6084 0.77 0.044578
Target:  5'- gCGCUCGCCGagguguuCCAGUUGGCguccauCGCCUCGGc -3'
miRNA:   3'- -GCGGGCGGC-------GGUCAGCCG------GCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 6740 0.67 0.226264
Target:  5'- gCGCgCCGCgGCCAGcaCGGCgUcgauggcagccugaGCCUCGGu -3'
miRNA:   3'- -GCG-GGCGgCGGUCa-GCCG-G--------------CGGAGCC- -5'
18764 3' -66 NC_004683.1 + 6869 0.68 0.18285
Target:  5'- aGCCCuacgGCCGCUGGaCGGCgCGCgaCGGc -3'
miRNA:   3'- gCGGG----CGGCGGUCaGCCG-GCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 6952 0.72 0.099098
Target:  5'- uCGCgCGCCGuCCAG-CGGCCGUagggCUUGGu -3'
miRNA:   3'- -GCGgGCGGC-GGUCaGCCGGCG----GAGCC- -5'
18764 3' -66 NC_004683.1 + 7020 1.09 0.000138
Target:  5'- cCGCCCGCCGCCAGUCGGCCGCCUCGGu -3'
miRNA:   3'- -GCGGGCGGCGGUCAGCCGGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 7311 0.66 0.262301
Target:  5'- gGCCgGCCGgaaaugcacacCCGGUUGGCgagucguggugcgUGCCUUGGc -3'
miRNA:   3'- gCGGgCGGC-----------GGUCAGCCG-------------GCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 7476 0.71 0.11256
Target:  5'- gCGCCCgGCCGCCgaauccaGGUCGaG-CGCCUcCGGg -3'
miRNA:   3'- -GCGGG-CGGCGG-------UCAGC-CgGCGGA-GCC- -5'
18764 3' -66 NC_004683.1 + 8254 0.66 0.269162
Target:  5'- uGCCC-CUGCUuGgccgCGGCCuucgcgGCCUCGGc -3'
miRNA:   3'- gCGGGcGGCGGuCa---GCCGG------CGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.