miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 7020 1.09 0.000138
Target:  5'- cCGCCCGCCGCCAGUCGGCCGCCUCGGu -3'
miRNA:   3'- -GCGGGCGGCGGUCAGCCGGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 52215 0.81 0.020947
Target:  5'- aGgCCGUCGUCGGUCGGguCCGCCUCGGc -3'
miRNA:   3'- gCgGGCGGCGGUCAGCC--GGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 20497 0.8 0.025338
Target:  5'- cCGCCggUGCCGCC-GUUGGCCGCCcCGGg -3'
miRNA:   3'- -GCGG--GCGGCGGuCAGCCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 28724 0.78 0.033225
Target:  5'- aCGCCgagCGCCGCCAagucucggccGUCGGCCGCCaaaccuUCGGc -3'
miRNA:   3'- -GCGG---GCGGCGGU----------CAGCCGGCGG------AGCC- -5'
18764 3' -66 NC_004683.1 + 6084 0.77 0.044578
Target:  5'- gCGCUCGCCGagguguuCCAGUUGGCguccauCGCCUCGGc -3'
miRNA:   3'- -GCGGGCGGC-------GGUCAGCCG------GCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 646 0.76 0.053928
Target:  5'- cCGCCaaGUCGCacaGGUCGGCCaCCUCGGg -3'
miRNA:   3'- -GCGGg-CGGCGg--UCAGCCGGcGGAGCC- -5'
18764 3' -66 NC_004683.1 + 46401 0.74 0.070387
Target:  5'- uGCCCGCaCGUCGGgcacaCCGCCUCGGg -3'
miRNA:   3'- gCGGGCG-GCGGUCagcc-GGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 23796 0.73 0.086937
Target:  5'- gGUgCCGCCGCCGGU--GCCGCCgcggCGGa -3'
miRNA:   3'- gCG-GGCGGCGGUCAgcCGGCGGa---GCC- -5'
18764 3' -66 NC_004683.1 + 20385 0.73 0.086937
Target:  5'- aCGCgCUGCCGCC-GUC-GCCGCCcCGGc -3'
miRNA:   3'- -GCG-GGCGGCGGuCAGcCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 32632 0.73 0.091621
Target:  5'- uCGCCCaGCCGCaguuGGUCGGCaGCCU-GGa -3'
miRNA:   3'- -GCGGG-CGGCGg---UCAGCCGgCGGAgCC- -5'
18764 3' -66 NC_004683.1 + 24002 0.72 0.096543
Target:  5'- gGCCCGacgaUGCC-GUCGGCCGCCacgccuacgCGGc -3'
miRNA:   3'- gCGGGCg---GCGGuCAGCCGGCGGa--------GCC- -5'
18764 3' -66 NC_004683.1 + 25891 0.72 0.099098
Target:  5'- aGUUCGCCgGgCAGacgcUGGCCGCCUCGGu -3'
miRNA:   3'- gCGGGCGG-CgGUCa---GCCGGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 23484 0.72 0.099098
Target:  5'- aGUCCaGCCGCCcucGUCGguGCCGCCgCGGg -3'
miRNA:   3'- gCGGG-CGGCGGu--CAGC--CGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 6952 0.72 0.099098
Target:  5'- uCGCgCGCCGuCCAG-CGGCCGUagggCUUGGu -3'
miRNA:   3'- -GCGgGCGGC-GGUCaGCCGGCG----GAGCC- -5'
18764 3' -66 NC_004683.1 + 52666 0.72 0.104399
Target:  5'- aCGCaUCGCCGCCAGUauggaGGaCCGCCcCGa -3'
miRNA:   3'- -GCG-GGCGGCGGUCAg----CC-GGCGGaGCc -5'
18764 3' -66 NC_004683.1 + 1351 0.72 0.107148
Target:  5'- uCGCUCGaucCCGCCgAGuUCGGCCgcgagcGCCUCGGc -3'
miRNA:   3'- -GCGGGC---GGCGG-UC-AGCCGG------CGGAGCC- -5'
18764 3' -66 NC_004683.1 + 24191 0.71 0.109965
Target:  5'- gCGCCUGCCGCUcaAGcUCGGCucauccgaCGCC-CGGg -3'
miRNA:   3'- -GCGGGCGGCGG--UC-AGCCG--------GCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 7476 0.71 0.11256
Target:  5'- gCGCCCgGCCGCCgaauccaGGUCGaG-CGCCUcCGGg -3'
miRNA:   3'- -GCGGG-CGGCGG-------UCAGC-CgGCGGA-GCC- -5'
18764 3' -66 NC_004683.1 + 51931 0.71 0.121942
Target:  5'- aGCUCGa-GCgCGGUCGGCCGCCgugCGa -3'
miRNA:   3'- gCGGGCggCG-GUCAGCCGGCGGa--GCc -5'
18764 3' -66 NC_004683.1 + 13618 0.71 0.121942
Target:  5'- aGCUCGCCGgCA-UCGG-CGUCUCGGg -3'
miRNA:   3'- gCGGGCGGCgGUcAGCCgGCGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.