Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18764 | 3' | -66 | NC_004683.1 | + | 32512 | 0.66 | 0.262919 |
Target: 5'- aGCCggaCGUgGCgCAGacCGGCCGCCUUGa -3' miRNA: 3'- gCGG---GCGgCG-GUCa-GCCGGCGGAGCc -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 43011 | 0.66 | 0.250785 |
Target: 5'- uGCCCGUCG-CGGUCGGCUucuCCgaCGGc -3' miRNA: 3'- gCGGGCGGCgGUCAGCCGGc--GGa-GCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 23163 | 0.66 | 0.262919 |
Target: 5'- aCGCCCacgagaGCgCGCCGGUgagcaccaGGCCGCCgagcaGGc -3' miRNA: 3'- -GCGGG------CG-GCGGUCAg-------CCGGCGGag---CC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 328 | 0.66 | 0.250785 |
Target: 5'- aGcCCCGCCGCgGGcagcagCGGCgGCaucgcggcgCUCGGa -3' miRNA: 3'- gC-GGGCGGCGgUCa-----GCCGgCG---------GAGCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 52604 | 0.66 | 0.256793 |
Target: 5'- -uCCUugGCCGCCucGUCGGCCGCgaUCGc -3' miRNA: 3'- gcGGG--CGGCGGu-CAGCCGGCGg-AGCc -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 11865 | 0.66 | 0.262301 |
Target: 5'- cCGUCCGaUCGaCgAGUCGGCCaGCCacuccuugaacuuUCGGa -3' miRNA: 3'- -GCGGGC-GGC-GgUCAGCCGG-CGG-------------AGCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 43156 | 0.66 | 0.250785 |
Target: 5'- gGCCuCGCCGUCAGgauuggcgaagaUCgGGCCGgCugUCGGg -3' miRNA: 3'- gCGG-GCGGCGGUC------------AG-CCGGCgG--AGCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 45490 | 0.66 | 0.250785 |
Target: 5'- cCGCCCaaugcauCCGCUGGUUGGCgGUCagGGg -3' miRNA: 3'- -GCGGGc------GGCGGUCAGCCGgCGGagCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 47015 | 0.66 | 0.259229 |
Target: 5'- gCGCgUGCCGCUccaccgucgugcacGUCGGCagCGCCUCGcGg -3' miRNA: 3'- -GCGgGCGGCGGu-------------CAGCCG--GCGGAGC-C- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 3344 | 0.66 | 0.287944 |
Target: 5'- uGCCCGUaguuugaguagguCGCCg--CGGCCaggcCCUCGGa -3' miRNA: 3'- gCGGGCG-------------GCGGucaGCCGGc---GGAGCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 12880 | 0.66 | 0.262919 |
Target: 5'- uCGCCCGgguauCCGCCAG-CGGCguauccCGCCg-GGu -3' miRNA: 3'- -GCGGGC-----GGCGGUCaGCCG------GCGGagCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 54978 | 0.66 | 0.28861 |
Target: 5'- aCGCacaCCGCagCGUCAucgagcgcGUCGGCgGCCUCGa -3' miRNA: 3'- -GCG---GGCG--GCGGU--------CAGCCGgCGGAGCc -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 53637 | 0.66 | 0.262919 |
Target: 5'- gGCCCGCCGCgAccUGGCCGCg---- -3' miRNA: 3'- gCGGGCGGCGgUcaGCCGGCGgagcc -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 41100 | 0.66 | 0.269162 |
Target: 5'- cCGCgCCGCUGCCA--CGGCCgggGCCUUu- -3' miRNA: 3'- -GCG-GGCGGCGGUcaGCCGG---CGGAGcc -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 14240 | 0.66 | 0.269162 |
Target: 5'- aGCaCUGCCGCaAGcUGuGCCGCCUCa- -3' miRNA: 3'- gCG-GGCGGCGgUCaGC-CGGCGGAGcc -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 25529 | 0.66 | 0.269162 |
Target: 5'- aCGCCgUGCCGCUguggcucggccuGGUC-GCCGCCcUGGc -3' miRNA: 3'- -GCGG-GCGGCGG------------UCAGcCGGCGGaGCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 3851 | 0.66 | 0.275525 |
Target: 5'- cCGCgagUCGCCGCCcaaGGUgcaguucgaccaCGGCCGCCaccccaugaUCGGc -3' miRNA: 3'- -GCG---GGCGGCGG---UCA------------GCCGGCGG---------AGCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 13353 | 0.66 | 0.28861 |
Target: 5'- aGCCUGCCcCCAGUCuccGGUgGCggCGGc -3' miRNA: 3'- gCGGGCGGcGGUCAG---CCGgCGgaGCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 5833 | 0.66 | 0.275525 |
Target: 5'- aGCUCGCCGCgCGGcaccGCCGCCaaGGc -3' miRNA: 3'- gCGGGCGGCG-GUCagc-CGGCGGagCC- -5' |
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18764 | 3' | -66 | NC_004683.1 | + | 24643 | 0.66 | 0.28861 |
Target: 5'- gCGCCCagGCCGCCgAGUUcGCgCGCCUg-- -3' miRNA: 3'- -GCGGG--CGGCGG-UCAGcCG-GCGGAgcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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