miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 10027 0.66 0.275525
Target:  5'- aGcCCCGCuCGUCA--CGGUCGCCgCGGu -3'
miRNA:   3'- gC-GGGCG-GCGGUcaGCCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 11865 0.66 0.262301
Target:  5'- cCGUCCGaUCGaCgAGUCGGCCaGCCacuccuugaacuuUCGGa -3'
miRNA:   3'- -GCGGGC-GGC-GgUCAGCCGG-CGG-------------AGCC- -5'
18764 3' -66 NC_004683.1 + 23163 0.66 0.262919
Target:  5'- aCGCCCacgagaGCgCGCCGGUgagcaccaGGCCGCCgagcaGGc -3'
miRNA:   3'- -GCGGG------CG-GCGGUCAg-------CCGGCGGag---CC- -5'
18764 3' -66 NC_004683.1 + 839 0.66 0.282007
Target:  5'- uCGUgCGCCGaCCAGgaaaUGaGCCGCUgcUCGGu -3'
miRNA:   3'- -GCGgGCGGC-GGUCa---GC-CGGCGG--AGCC- -5'
18764 3' -66 NC_004683.1 + 40927 0.66 0.282007
Target:  5'- uCGCCCGCgaUGCaCAcUCGGCacuucgauggCGCCUCGu -3'
miRNA:   3'- -GCGGGCG--GCG-GUcAGCCG----------GCGGAGCc -5'
18764 3' -66 NC_004683.1 + 12880 0.66 0.262919
Target:  5'- uCGCCCGgguauCCGCCAG-CGGCguauccCGCCg-GGu -3'
miRNA:   3'- -GCGGGC-----GGCGGUCaGCCG------GCGGagCC- -5'
18764 3' -66 NC_004683.1 + 8254 0.66 0.269162
Target:  5'- uGCCC-CUGCUuGgccgCGGCCuucgcgGCCUCGGc -3'
miRNA:   3'- gCGGGcGGCGGuCa---GCCGG------CGGAGCC- -5'
18764 3' -66 NC_004683.1 + 47015 0.66 0.259229
Target:  5'- gCGCgUGCCGCUccaccgucgugcacGUCGGCagCGCCUCGcGg -3'
miRNA:   3'- -GCGgGCGGCGGu-------------CAGCCG--GCGGAGC-C- -5'
18764 3' -66 NC_004683.1 + 26410 0.67 0.237976
Target:  5'- uCGCaCCGCCgacagcGCCGGUCGauuuccuuguaUGCCUCGGu -3'
miRNA:   3'- -GCG-GGCGG------CGGUCAGCcg---------GCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 40597 0.67 0.244894
Target:  5'- gGCCCGCCGa-GGg-GGgCGCCgugCGGg -3'
miRNA:   3'- gCGGGCGGCggUCagCCgGCGGa--GCC- -5'
18764 3' -66 NC_004683.1 + 6740 0.67 0.226264
Target:  5'- gCGCgCCGCgGCCAGcaCGGCgUcgauggcagccugaGCCUCGGu -3'
miRNA:   3'- -GCG-GGCGgCGGUCa-GCCG-G--------------CGGAGCC- -5'
18764 3' -66 NC_004683.1 + 257 0.67 0.217143
Target:  5'- uGCCCGCgGCgGGgcuGGUCGCgaCGGu -3'
miRNA:   3'- gCGGGCGgCGgUCag-CCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 27539 0.67 0.244894
Target:  5'- aGCgCGCuCGCUg--CGGCUGCCUgCGGu -3'
miRNA:   3'- gCGgGCG-GCGGucaGCCGGCGGA-GCC- -5'
18764 3' -66 NC_004683.1 + 20620 0.67 0.222469
Target:  5'- cCGCCguUGCCGCCGGU--GCCGCCggugaucgugcCGGa -3'
miRNA:   3'- -GCGG--GCGGCGGUCAgcCGGCGGa----------GCC- -5'
18764 3' -66 NC_004683.1 + 15683 0.67 0.244894
Target:  5'- uGCCCGCgGCCacgaucuucgAGUCugcguuGCCGCCgUCGa -3'
miRNA:   3'- gCGGGCGgCGG----------UCAGc-----CGGCGG-AGCc -5'
18764 3' -66 NC_004683.1 + 44447 0.67 0.239117
Target:  5'- -uCUCGCCGUCgauguAGUCGGCCGUCggcuugaCGGu -3'
miRNA:   3'- gcGGGCGGCGG-----UCAGCCGGCGGa------GCC- -5'
18764 3' -66 NC_004683.1 + 4050 0.67 0.239117
Target:  5'- aCGCgCGCUaCCAcGUgCGcGCCGCcCUCGGg -3'
miRNA:   3'- -GCGgGCGGcGGU-CA-GC-CGGCG-GAGCC- -5'
18764 3' -66 NC_004683.1 + 33245 0.67 0.239117
Target:  5'- gGCCCGUUucccggcuaGCCAGUCGucGCaCGCUUCGcGg -3'
miRNA:   3'- gCGGGCGG---------CGGUCAGC--CG-GCGGAGC-C- -5'
18764 3' -66 NC_004683.1 + 21940 0.67 0.227906
Target:  5'- cCGCCCGgCGgUGGcgggCGGCCGCCgaguucacCGGc -3'
miRNA:   3'- -GCGGGCgGCgGUCa---GCCGGCGGa-------GCC- -5'
18764 3' -66 NC_004683.1 + 40945 0.67 0.222469
Target:  5'- cCGCgCCGCCguuGCCcGUCGGCCacGCCgaccUGGc -3'
miRNA:   3'- -GCG-GGCGG---CGGuCAGCCGG--CGGa---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.