miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 52666 0.72 0.104399
Target:  5'- aCGCaUCGCCGCCAGUauggaGGaCCGCCcCGa -3'
miRNA:   3'- -GCG-GGCGGCGGUCAg----CC-GGCGGaGCc -5'
18764 3' -66 NC_004683.1 + 1351 0.72 0.107148
Target:  5'- uCGCUCGaucCCGCCgAGuUCGGCCgcgagcGCCUCGGc -3'
miRNA:   3'- -GCGGGC---GGCGG-UC-AGCCGG------CGGAGCC- -5'
18764 3' -66 NC_004683.1 + 24191 0.71 0.109965
Target:  5'- gCGCCUGCCGCUcaAGcUCGGCucauccgaCGCC-CGGg -3'
miRNA:   3'- -GCGGGCGGCGG--UC-AGCCG--------GCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 13618 0.71 0.121942
Target:  5'- aGCUCGCCGgCA-UCGG-CGUCUCGGg -3'
miRNA:   3'- gCGGGCGGCgGUcAGCCgGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 43825 0.71 0.128376
Target:  5'- gGUgCGCUGCUgaccUCGGCCGCgCUCGGu -3'
miRNA:   3'- gCGgGCGGCGGuc--AGCCGGCG-GAGCC- -5'
18764 3' -66 NC_004683.1 + 26961 0.68 0.182397
Target:  5'- gGUCCGCgcguacgcgugagCGCCGGgcaggcCGGCCaCCUCGGc -3'
miRNA:   3'- gCGGGCG-------------GCGGUCa-----GCCGGcGGAGCC- -5'
18764 3' -66 NC_004683.1 + 25108 0.69 0.17397
Target:  5'- gGCCaacccggcggCGuuGCCGGUCcuGGCCGCCgucacCGGu -3'
miRNA:   3'- gCGG----------GCggCGGUCAG--CCGGCGGa----GCC- -5'
18764 3' -66 NC_004683.1 + 26203 0.69 0.161371
Target:  5'- gCGCUCGcCCGCCAgGUCGagaacGCCGCCgaacgCGa -3'
miRNA:   3'- -GCGGGC-GGCGGU-CAGC-----CGGCGGa----GCc -5'
18764 3' -66 NC_004683.1 + 53585 0.7 0.149601
Target:  5'- aCGCCgGCCGCaccGcCGGCCGCgUCu- -3'
miRNA:   3'- -GCGGgCGGCGgu-CaGCCGGCGgAGcc -5'
18764 3' -66 NC_004683.1 + 26429 0.7 0.138616
Target:  5'- cCGCCggUGCCGCCgAGUUGGCCGCa---- -3'
miRNA:   3'- -GCGG--GCGGCGG-UCAGCCGGCGgagcc -5'
18764 3' -66 NC_004683.1 + 51627 0.7 0.131709
Target:  5'- aGCCCGCCcccgaGCCcgcGGUCGcGCUGCCggGGu -3'
miRNA:   3'- gCGGGCGG-----CGG---UCAGC-CGGCGGagCC- -5'
18764 3' -66 NC_004683.1 + 24002 0.72 0.096543
Target:  5'- gGCCCGacgaUGCC-GUCGGCCGCCacgccuacgCGGc -3'
miRNA:   3'- gCGGGCg---GCGGuCAGCCGGCGGa--------GCC- -5'
18764 3' -66 NC_004683.1 + 20385 0.73 0.086937
Target:  5'- aCGCgCUGCCGCC-GUC-GCCGCCcCGGc -3'
miRNA:   3'- -GCG-GGCGGCGGuCAGcCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 23796 0.73 0.086937
Target:  5'- gGUgCCGCCGCCGGU--GCCGCCgcggCGGa -3'
miRNA:   3'- gCG-GGCGGCGGUCAgcCGGCGGa---GCC- -5'
18764 3' -66 NC_004683.1 + 46401 0.74 0.070387
Target:  5'- uGCCCGCaCGUCGGgcacaCCGCCUCGGg -3'
miRNA:   3'- gCGGGCG-GCGGUCagcc-GGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 646 0.76 0.053928
Target:  5'- cCGCCaaGUCGCacaGGUCGGCCaCCUCGGg -3'
miRNA:   3'- -GCGGg-CGGCGg--UCAGCCGGcGGAGCC- -5'
18764 3' -66 NC_004683.1 + 6084 0.77 0.044578
Target:  5'- gCGCUCGCCGagguguuCCAGUUGGCguccauCGCCUCGGc -3'
miRNA:   3'- -GCGGGCGGC-------GGUCAGCCG------GCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 28724 0.78 0.033225
Target:  5'- aCGCCgagCGCCGCCAagucucggccGUCGGCCGCCaaaccuUCGGc -3'
miRNA:   3'- -GCGG---GCGGCGGU----------CAGCCGGCGG------AGCC- -5'
18764 3' -66 NC_004683.1 + 20497 0.8 0.025338
Target:  5'- cCGCCggUGCCGCC-GUUGGCCGCCcCGGg -3'
miRNA:   3'- -GCGG--GCGGCGGuCAGCCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 3344 0.66 0.287944
Target:  5'- uGCCCGUaguuugaguagguCGCCg--CGGCCaggcCCUCGGa -3'
miRNA:   3'- gCGGGCG-------------GCGGucaGCCGGc---GGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.