miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 20620 0.67 0.222469
Target:  5'- cCGCCguUGCCGCCGGU--GCCGCCggugaucgugcCGGa -3'
miRNA:   3'- -GCGG--GCGGCGGUCAgcCGGCGGa----------GCC- -5'
18764 3' -66 NC_004683.1 + 257 0.67 0.217143
Target:  5'- uGCCCGCgGCgGGgcuGGUCGCgaCGGu -3'
miRNA:   3'- gCGGGCGgCGgUCag-CCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 51782 0.68 0.211927
Target:  5'- -uCCUGCaggGCCuGcUCGGCUGCCUCGa -3'
miRNA:   3'- gcGGGCGg--CGGuC-AGCCGGCGGAGCc -5'
18764 3' -66 NC_004683.1 + 46099 0.68 0.210896
Target:  5'- cCGCUCgGCCGCCGcGUCGGgcagcacUCGCCgaacagaUCGGg -3'
miRNA:   3'- -GCGGG-CGGCGGU-CAGCC-------GGCGG-------AGCC- -5'
18764 3' -66 NC_004683.1 + 12793 0.68 0.210383
Target:  5'- gCGcCCCGCgCGCCGaggaugccgaggauGcCGuGcCCGCCUCGGa -3'
miRNA:   3'- -GC-GGGCG-GCGGU--------------CaGC-C-GGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 19230 0.68 0.206818
Target:  5'- uGgCCGCCGCCGGgucgaacgCGGUgCGCgUCGa -3'
miRNA:   3'- gCgGGCGGCGGUCa-------GCCG-GCGgAGCc -5'
18764 3' -66 NC_004683.1 + 3553 0.68 0.201322
Target:  5'- aGCCCGCCGUUAuuagcguGUUGaUCGUCUCGGc -3'
miRNA:   3'- gCGGGCGGCGGU-------CAGCcGGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 10043 0.68 0.19692
Target:  5'- aCG-CCGCCgaGCCGuUCGGCCGCggCGGc -3'
miRNA:   3'- -GCgGGCGG--CGGUcAGCCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 6869 0.68 0.18285
Target:  5'- aGCCCuacgGCCGCUGGaCGGCgCGCgaCGGc -3'
miRNA:   3'- gCGGG----CGGCGGUCaGCCG-GCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 26961 0.68 0.182397
Target:  5'- gGUCCGCgcguacgcgugagCGCCGGgcaggcCGGCCaCCUCGGc -3'
miRNA:   3'- gCGGGCG-------------GCGGUCa-----GCCGGcGGAGCC- -5'
18764 3' -66 NC_004683.1 + 25108 0.69 0.17397
Target:  5'- gGCCaacccggcggCGuuGCCGGUCcuGGCCGCCgucacCGGu -3'
miRNA:   3'- gCGG----------GCggCGGUCAG--CCGGCGGa----GCC- -5'
18764 3' -66 NC_004683.1 + 51226 0.69 0.165477
Target:  5'- cCGCCacgugGCCGuCCAGUCGGCCuugcgGCCcuUCGc -3'
miRNA:   3'- -GCGGg----CGGC-GGUCAGCCGG-----CGG--AGCc -5'
18764 3' -66 NC_004683.1 + 26203 0.69 0.161371
Target:  5'- gCGCUCGcCCGCCAgGUCGagaacGCCGCCgaacgCGa -3'
miRNA:   3'- -GCGGGC-GGCGGU-CAGC-----CGGCGGa----GCc -5'
18764 3' -66 NC_004683.1 + 53585 0.7 0.149601
Target:  5'- aCGCCgGCCGCaccGcCGGCCGCgUCu- -3'
miRNA:   3'- -GCGGgCGGCGgu-CaGCCGGCGgAGcc -5'
18764 3' -66 NC_004683.1 + 44850 0.7 0.142193
Target:  5'- gGCCCGCCGCCGccgGGUCGUagguuuggauCUCGGc -3'
miRNA:   3'- gCGGGCGGCGGUcagCCGGCG----------GAGCC- -5'
18764 3' -66 NC_004683.1 + 2838 0.7 0.142193
Target:  5'- uGgCCGCCGCCgAGcucgccgCGGCCGCCgCGc -3'
miRNA:   3'- gCgGGCGGCGG-UCa------GCCGGCGGaGCc -5'
18764 3' -66 NC_004683.1 + 40874 0.7 0.142193
Target:  5'- gGCCuCGCCGUCGgcgagcgcGUCGGUCGCggCGGu -3'
miRNA:   3'- gCGG-GCGGCGGU--------CAGCCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 26429 0.7 0.138616
Target:  5'- cCGCCggUGCCGCCgAGUUGGCCGCa---- -3'
miRNA:   3'- -GCGG--GCGGCGG-UCAGCCGGCGgagcc -5'
18764 3' -66 NC_004683.1 + 51627 0.7 0.131709
Target:  5'- aGCCCGCCcccgaGCCcgcGGUCGcGCUGCCggGGu -3'
miRNA:   3'- gCGGGCGG-----CGG---UCAGC-CGGCGGagCC- -5'
18764 3' -66 NC_004683.1 + 43825 0.71 0.128376
Target:  5'- gGUgCGCUGCUgaccUCGGCCGCgCUCGGu -3'
miRNA:   3'- gCGgGCGGCGGuc--AGCCGGCG-GAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.