miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 7311 0.66 0.262301
Target:  5'- gGCCgGCCGgaaaugcacacCCGGUUGGCgagucguggugcgUGCCUUGGc -3'
miRNA:   3'- gCGGgCGGC-----------GGUCAGCCG-------------GCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 11865 0.66 0.262301
Target:  5'- cCGUCCGaUCGaCgAGUCGGCCaGCCacuccuugaacuuUCGGa -3'
miRNA:   3'- -GCGGGC-GGC-GgUCAGCCGG-CGG-------------AGCC- -5'
18764 3' -66 NC_004683.1 + 47015 0.66 0.259229
Target:  5'- gCGCgUGCCGCUccaccgucgugcacGUCGGCagCGCCUCGcGg -3'
miRNA:   3'- -GCGgGCGGCGGu-------------CAGCCG--GCGGAGC-C- -5'
18764 3' -66 NC_004683.1 + 52604 0.66 0.256793
Target:  5'- -uCCUugGCCGCCucGUCGGCCGCgaUCGc -3'
miRNA:   3'- gcGGG--CGGCGGu-CAGCCGGCGg-AGCc -5'
18764 3' -66 NC_004683.1 + 43011 0.66 0.250785
Target:  5'- uGCCCGUCG-CGGUCGGCUucuCCgaCGGc -3'
miRNA:   3'- gCGGGCGGCgGUCAGCCGGc--GGa-GCC- -5'
18764 3' -66 NC_004683.1 + 328 0.66 0.250785
Target:  5'- aGcCCCGCCGCgGGcagcagCGGCgGCaucgcggcgCUCGGa -3'
miRNA:   3'- gC-GGGCGGCGgUCa-----GCCGgCG---------GAGCC- -5'
18764 3' -66 NC_004683.1 + 45490 0.66 0.250785
Target:  5'- cCGCCCaaugcauCCGCUGGUUGGCgGUCagGGg -3'
miRNA:   3'- -GCGGGc------GGCGGUCAGCCGgCGGagCC- -5'
18764 3' -66 NC_004683.1 + 43156 0.66 0.250785
Target:  5'- gGCCuCGCCGUCAGgauuggcgaagaUCgGGCCGgCugUCGGg -3'
miRNA:   3'- gCGG-GCGGCGGUC------------AG-CCGGCgG--AGCC- -5'
18764 3' -66 NC_004683.1 + 40597 0.67 0.244894
Target:  5'- gGCCCGCCGa-GGg-GGgCGCCgugCGGg -3'
miRNA:   3'- gCGGGCGGCggUCagCCgGCGGa--GCC- -5'
18764 3' -66 NC_004683.1 + 15683 0.67 0.244894
Target:  5'- uGCCCGCgGCCacgaucuucgAGUCugcguuGCCGCCgUCGa -3'
miRNA:   3'- gCGGGCGgCGG----------UCAGc-----CGGCGG-AGCc -5'
18764 3' -66 NC_004683.1 + 27539 0.67 0.244894
Target:  5'- aGCgCGCuCGCUg--CGGCUGCCUgCGGu -3'
miRNA:   3'- gCGgGCG-GCGGucaGCCGGCGGA-GCC- -5'
18764 3' -66 NC_004683.1 + 44447 0.67 0.239117
Target:  5'- -uCUCGCCGUCgauguAGUCGGCCGUCggcuugaCGGu -3'
miRNA:   3'- gcGGGCGGCGG-----UCAGCCGGCGGa------GCC- -5'
18764 3' -66 NC_004683.1 + 33245 0.67 0.239117
Target:  5'- gGCCCGUUucccggcuaGCCAGUCGucGCaCGCUUCGcGg -3'
miRNA:   3'- gCGGGCGG---------CGGUCAGC--CG-GCGGAGC-C- -5'
18764 3' -66 NC_004683.1 + 4050 0.67 0.239117
Target:  5'- aCGCgCGCUaCCAcGUgCGcGCCGCcCUCGGg -3'
miRNA:   3'- -GCGgGCGGcGGU-CA-GC-CGGCG-GAGCC- -5'
18764 3' -66 NC_004683.1 + 26410 0.67 0.237976
Target:  5'- uCGCaCCGCCgacagcGCCGGUCGauuuccuuguaUGCCUCGGu -3'
miRNA:   3'- -GCG-GGCGG------CGGUCAGCcg---------GCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 21940 0.67 0.227906
Target:  5'- cCGCCCGgCGgUGGcgggCGGCCGCCgaguucacCGGc -3'
miRNA:   3'- -GCGGGCgGCgGUCa---GCCGGCGGa-------GCC- -5'
18764 3' -66 NC_004683.1 + 41046 0.67 0.227906
Target:  5'- uGCgCGCgGCCAgGUCGGCgugGCCgaCGGg -3'
miRNA:   3'- gCGgGCGgCGGU-CAGCCGg--CGGa-GCC- -5'
18764 3' -66 NC_004683.1 + 52418 0.67 0.227906
Target:  5'- gCGaguaCCGCCgaacGCCGGaaUCGGCCGuCCUUGa -3'
miRNA:   3'- -GCg---GGCGG----CGGUC--AGCCGGC-GGAGCc -5'
18764 3' -66 NC_004683.1 + 6740 0.67 0.226264
Target:  5'- gCGCgCCGCgGCCAGcaCGGCgUcgauggcagccugaGCCUCGGu -3'
miRNA:   3'- -GCG-GGCGgCGGUCa-GCCG-G--------------CGGAGCC- -5'
18764 3' -66 NC_004683.1 + 20620 0.67 0.222469
Target:  5'- cCGCCguUGCCGCCGGU--GCCGCCggugaucgugcCGGa -3'
miRNA:   3'- -GCGG--GCGGCGGUCAgcCGGCGGa----------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.