miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18765 3' -64.2 NC_004683.1 + 9037 1.08 0.000192
Target:  5'- aUCCGUCGGCCUCGCCGGGCAGCUCCAc -3'
miRNA:   3'- -AGGCAGCCGGAGCGGCCCGUCGAGGU- -5'
18765 3' -64.2 NC_004683.1 + 27940 0.78 0.040895
Target:  5'- cCUGUaCGGCCccugccUCGCCGGGCGGCgCCAa -3'
miRNA:   3'- aGGCA-GCCGG------AGCGGCCCGUCGaGGU- -5'
18765 3' -64.2 NC_004683.1 + 46100 0.77 0.046937
Target:  5'- aCCGcUCGGCCgccgCGUCGGGCAGCacucgCCGa -3'
miRNA:   3'- aGGC-AGCCGGa---GCGGCCCGUCGa----GGU- -5'
18765 3' -64.2 NC_004683.1 + 52869 0.73 0.087835
Target:  5'- cUCGUCGGCCUCGgCGaGCAGCgCCu -3'
miRNA:   3'- aGGCAGCCGGAGCgGCcCGUCGaGGu -5'
18765 3' -64.2 NC_004683.1 + 14813 0.73 0.092685
Target:  5'- aUCGUUGGCCgCGCCcucGGGCAGCgaCCAc -3'
miRNA:   3'- aGGCAGCCGGaGCGG---CCCGUCGa-GGU- -5'
18765 3' -64.2 NC_004683.1 + 20721 0.73 0.10044
Target:  5'- aUCCGUUGGCUggagUGCCGGGUGGg-CCAg -3'
miRNA:   3'- -AGGCAGCCGGa---GCGGCCCGUCgaGGU- -5'
18765 3' -64.2 NC_004683.1 + 12323 0.71 0.130916
Target:  5'- gCCGggcaUCGGCa-CGCCGGGC-GCUCCc -3'
miRNA:   3'- aGGC----AGCCGgaGCGGCCCGuCGAGGu -5'
18765 3' -64.2 NC_004683.1 + 3369 0.7 0.1531
Target:  5'- gCCGUCGGCCaggcgUCGgCGGGCcuGC-CCGu -3'
miRNA:   3'- aGGCAGCCGG-----AGCgGCCCGu-CGaGGU- -5'
18765 3' -64.2 NC_004683.1 + 49348 0.7 0.165428
Target:  5'- gCCG-CGaCgUCGUCGGGCAGCgUCCAc -3'
miRNA:   3'- aGGCaGCcGgAGCGGCCCGUCG-AGGU- -5'
18765 3' -64.2 NC_004683.1 + 24182 0.69 0.187961
Target:  5'- gUCGUCGaCCUUGCCGaGCAGCgcgggCCAg -3'
miRNA:   3'- aGGCAGCcGGAGCGGCcCGUCGa----GGU- -5'
18765 3' -64.2 NC_004683.1 + 31538 0.69 0.197707
Target:  5'- -gCGUCGGCCaCGCCGGcG-AGCUCg- -3'
miRNA:   3'- agGCAGCCGGaGCGGCC-CgUCGAGgu -5'
18765 3' -64.2 NC_004683.1 + 49732 0.69 0.197707
Target:  5'- -gCGUCGGCCUUGCCaGGCuuguugAGUUCg- -3'
miRNA:   3'- agGCAGCCGGAGCGGcCCG------UCGAGgu -5'
18765 3' -64.2 NC_004683.1 + 26558 0.68 0.207892
Target:  5'- cUCGUCGGCguaucgggCUCGgCGGGCGGC-CUg -3'
miRNA:   3'- aGGCAGCCG--------GAGCgGCCCGUCGaGGu -5'
18765 3' -64.2 NC_004683.1 + 32232 0.68 0.218526
Target:  5'- aUCCGUCGGCUUaCGCCuacGCAGgUUCGa -3'
miRNA:   3'- -AGGCAGCCGGA-GCGGcc-CGUCgAGGU- -5'
18765 3' -64.2 NC_004683.1 + 20486 0.67 0.24119
Target:  5'- gCCGUUGGCCgCcCCGGGUgcgccgccAGCUgCCAg -3'
miRNA:   3'- aGGCAGCCGGaGcGGCCCG--------UCGA-GGU- -5'
18765 3' -64.2 NC_004683.1 + 40308 0.67 0.24119
Target:  5'- gCCGagGGCaUCGCCGcGGCGGUgacCCGa -3'
miRNA:   3'- aGGCagCCGgAGCGGC-CCGUCGa--GGU- -5'
18765 3' -64.2 NC_004683.1 + 8547 0.67 0.24119
Target:  5'- aCCGcacCGGCCugaUCGCCGuGGC-GUUCCGc -3'
miRNA:   3'- aGGCa--GCCGG---AGCGGC-CCGuCGAGGU- -5'
18765 3' -64.2 NC_004683.1 + 13725 0.67 0.251401
Target:  5'- gCCGgugcgCGGCCUgcgcugccaaacacCGCCGGGCaacaGGCcCCGc -3'
miRNA:   3'- aGGCa----GCCGGA--------------GCGGCCCG----UCGaGGU- -5'
18765 3' -64.2 NC_004683.1 + 2503 0.67 0.25324
Target:  5'- --aGUUGGUguuCUCGUCGGuGCGGUUCCGg -3'
miRNA:   3'- aggCAGCCG---GAGCGGCC-CGUCGAGGU- -5'
18765 3' -64.2 NC_004683.1 + 40959 0.67 0.25324
Target:  5'- cCCGUCGGCCaCGCCGaccuGGCcGCgcgcaucgCCGc -3'
miRNA:   3'- aGGCAGCCGGaGCGGC----CCGuCGa-------GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.