Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18765 | 3' | -64.2 | NC_004683.1 | + | 27940 | 0.78 | 0.040895 |
Target: 5'- cCUGUaCGGCCccugccUCGCCGGGCGGCgCCAa -3' miRNA: 3'- aGGCA-GCCGG------AGCGGCCCGUCGaGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 31893 | 0.66 | 0.313629 |
Target: 5'- aUCGUCGGCuCggGCCGGuGCAGC-Ca- -3' miRNA: 3'- aGGCAGCCG-GagCGGCC-CGUCGaGgu -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 52217 | 0.66 | 0.313629 |
Target: 5'- gCCGUCGucggucggguccGCCUCggcgacccggGCCGGcGCGGCaCCAa -3' miRNA: 3'- aGGCAGC------------CGGAG----------CGGCC-CGUCGaGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 25874 | 0.66 | 0.313629 |
Target: 5'- gCUG-CGGCUcggcgucgaguUCGCCGGGCAGaCgcuggCCGc -3' miRNA: 3'- aGGCaGCCGG-----------AGCGGCCCGUC-Ga----GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 8368 | 0.66 | 0.31145 |
Target: 5'- gCCGucuccugacggugaUCGGCCcCGCgCGGGCcGCgaUCCAg -3' miRNA: 3'- aGGC--------------AGCCGGaGCG-GCCCGuCG--AGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 21938 | 0.66 | 0.299322 |
Target: 5'- aUCCGccCGGCggUGgCGGGCGGCcgCCGa -3' miRNA: 3'- -AGGCa-GCCGgaGCgGCCCGUCGa-GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 29496 | 0.66 | 0.299322 |
Target: 5'- aCCGUCGGaCCUCaccaagggGCCGGGaacgugGGuUUCCAa -3' miRNA: 3'- aGGCAGCC-GGAG--------CGGCCCg-----UC-GAGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 13661 | 0.67 | 0.26578 |
Target: 5'- gCCGUCGGgCUCGCCacuGGGCAacaUCg- -3' miRNA: 3'- aGGCAGCCgGAGCGG---CCCGUcg-AGgu -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 40959 | 0.67 | 0.25324 |
Target: 5'- cCCGUCGGCCaCGCCGaccuGGCcGCgcgcaucgCCGc -3' miRNA: 3'- aGGCAGCCGGaGCGGC----CCGuCGa-------GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 31538 | 0.69 | 0.197707 |
Target: 5'- -gCGUCGGCCaCGCCGGcG-AGCUCg- -3' miRNA: 3'- agGCAGCCGGaGCGGCC-CgUCGAGgu -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 32232 | 0.68 | 0.218526 |
Target: 5'- aUCCGUCGGCUUaCGCCuacGCAGgUUCGa -3' miRNA: 3'- -AGGCAGCCGGA-GCGGcc-CGUCgAGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 8547 | 0.67 | 0.24119 |
Target: 5'- aCCGcacCGGCCugaUCGCCGuGGC-GUUCCGc -3' miRNA: 3'- aGGCa--GCCGG---AGCGGC-CCGuCGAGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 40308 | 0.67 | 0.24119 |
Target: 5'- gCCGagGGCaUCGCCGcGGCGGUgacCCGa -3' miRNA: 3'- aGGCagCCGgAGCGGC-CCGUCGa--GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 13725 | 0.67 | 0.251401 |
Target: 5'- gCCGgugcgCGGCCUgcgcugccaaacacCGCCGGGCaacaGGCcCCGc -3' miRNA: 3'- aGGCa----GCCGGA--------------GCGGCCCG----UCGaGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 2503 | 0.67 | 0.25324 |
Target: 5'- --aGUUGGUguuCUCGUCGGuGCGGUUCCGg -3' miRNA: 3'- aggCAGCCG---GAGCGGCC-CGUCGAGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 12870 | 0.66 | 0.320974 |
Target: 5'- aUCCGccagCGGCgUauccCGCCGGGUAGCcguagCCc -3' miRNA: 3'- -AGGCa---GCCGgA----GCGGCCCGUCGa----GGu -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 46100 | 0.77 | 0.046937 |
Target: 5'- aCCGcUCGGCCgccgCGUCGGGCAGCacucgCCGa -3' miRNA: 3'- aGGC-AGCCGGa---GCGGCCCGUCGa----GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 52869 | 0.73 | 0.087835 |
Target: 5'- cUCGUCGGCCUCGgCGaGCAGCgCCu -3' miRNA: 3'- aGGCAGCCGGAGCgGCcCGUCGaGGu -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 14813 | 0.73 | 0.092685 |
Target: 5'- aUCGUUGGCCgCGCCcucGGGCAGCgaCCAc -3' miRNA: 3'- aGGCAGCCGGaGCGG---CCCGUCGa-GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 20721 | 0.73 | 0.10044 |
Target: 5'- aUCCGUUGGCUggagUGCCGGGUGGg-CCAg -3' miRNA: 3'- -AGGCAGCCGGa---GCGGCCCGUCgaGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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