Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18765 | 3' | -64.2 | NC_004683.1 | + | 3369 | 0.7 | 0.1531 |
Target: 5'- gCCGUCGGCCaggcgUCGgCGGGCcuGC-CCGu -3' miRNA: 3'- aGGCAGCCGG-----AGCgGCCCGu-CGaGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 46675 | 0.66 | 0.299322 |
Target: 5'- gCCGUcgCGGcCCUCGaCCGGcaccaGCAGCggcagCCAg -3' miRNA: 3'- aGGCA--GCC-GGAGC-GGCC-----CGUCGa----GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 11787 | 0.66 | 0.299322 |
Target: 5'- aCCGUCGGCg-UGCCGcuGCAgcGCUCCc -3' miRNA: 3'- aGGCAGCCGgaGCGGCc-CGU--CGAGGu -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 12870 | 0.66 | 0.320974 |
Target: 5'- aUCCGccagCGGCgUauccCGCCGGGUAGCcguagCCc -3' miRNA: 3'- -AGGCa---GCCGgA----GCGGCCCGUCGa----GGu -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 9037 | 1.08 | 0.000192 |
Target: 5'- aUCCGUCGGCCUCGCCGGGCAGCUCCAc -3' miRNA: 3'- -AGGCAGCCGGAGCGGCCCGUCGAGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 46100 | 0.77 | 0.046937 |
Target: 5'- aCCGcUCGGCCgccgCGUCGGGCAGCacucgCCGa -3' miRNA: 3'- aGGC-AGCCGGa---GCGGCCCGUCGa----GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 52869 | 0.73 | 0.087835 |
Target: 5'- cUCGUCGGCCUCGgCGaGCAGCgCCu -3' miRNA: 3'- aGGCAGCCGGAGCgGCcCGUCGaGGu -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 14813 | 0.73 | 0.092685 |
Target: 5'- aUCGUUGGCCgCGCCcucGGGCAGCgaCCAc -3' miRNA: 3'- aGGCAGCCGGaGCGG---CCCGUCGa-GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 20721 | 0.73 | 0.10044 |
Target: 5'- aUCCGUUGGCUggagUGCCGGGUGGg-CCAg -3' miRNA: 3'- -AGGCAGCCGGa---GCGGCCCGUCgaGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 40883 | 0.66 | 0.278818 |
Target: 5'- cUCGcacUCGGCCUCGCCGucGGCgAGCgcgUCGg -3' miRNA: 3'- aGGC---AGCCGGAGCGGC--CCG-UCGa--GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 28781 | 0.67 | 0.263867 |
Target: 5'- cUCGUCGacacgggaucugaaGCCggCGCUGGGCAGgcCUCCGc -3' miRNA: 3'- aGGCAGC--------------CGGa-GCGGCCCGUC--GAGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 8976 | 0.67 | 0.259448 |
Target: 5'- gUUGUUGGCCagccgcugaaUCGCCGGGUacaGGUUCUg -3' miRNA: 3'- aGGCAGCCGG----------AGCGGCCCG---UCGAGGu -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 49348 | 0.7 | 0.165428 |
Target: 5'- gCCG-CGaCgUCGUCGGGCAGCgUCCAc -3' miRNA: 3'- aGGCaGCcGgAGCGGCCCGUCG-AGGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 41394 | 0.66 | 0.278818 |
Target: 5'- gCCGUCaGCCUgGgCGGGUGGCgcggugaggCCGg -3' miRNA: 3'- aGGCAGcCGGAgCgGCCCGUCGa--------GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 24182 | 0.69 | 0.187961 |
Target: 5'- gUCGUCGaCCUUGCCGaGCAGCgcgggCCAg -3' miRNA: 3'- aGGCAGCcGGAGCGGCcCGUCGa----GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 20486 | 0.67 | 0.24119 |
Target: 5'- gCCGUUGGCCgCcCCGGGUgcgccgccAGCUgCCAg -3' miRNA: 3'- aGGCAGCCGGaGcGGCCCG--------UCGA-GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 340 | 0.66 | 0.278818 |
Target: 5'- aCCGUCGcgaccaGCCcCGCCgcGGGCAGCagCGg -3' miRNA: 3'- aGGCAGC------CGGaGCGG--CCCGUCGagGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 22025 | 0.66 | 0.299322 |
Target: 5'- cUCGgCGGCCgcaccgccacCGCCGGGCGGauugCCGg -3' miRNA: 3'- aGGCaGCCGGa---------GCGGCCCGUCga--GGU- -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 49732 | 0.69 | 0.197707 |
Target: 5'- -gCGUCGGCCUUGCCaGGCuuguugAGUUCg- -3' miRNA: 3'- agGCAGCCGGAGCGGcCCG------UCGAGgu -5' |
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18765 | 3' | -64.2 | NC_004683.1 | + | 26558 | 0.68 | 0.207892 |
Target: 5'- cUCGUCGGCguaucgggCUCGgCGGGCGGC-CUg -3' miRNA: 3'- aGGCAGCCG--------GAGCgGCCCGUCGaGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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