Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18766 | 3' | -55.4 | NC_004683.1 | + | 38506 | 0.73 | 0.334542 |
Target: 5'- cCGCGgucugUCUUGaugCCGUGcUCGGCGAACa -3' miRNA: 3'- -GCGUa----AGAACg--GGCGC-AGCCGCUUGc -5' |
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18766 | 3' | -55.4 | NC_004683.1 | + | 3569 | 0.73 | 0.326584 |
Target: 5'- aGCGUucaacUCUUGCcgcccggcguguCCGCGUCGGCgucGAGCGa -3' miRNA: 3'- gCGUA-----AGAACG------------GGCGCAGCCG---CUUGC- -5' |
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18766 | 3' | -55.4 | NC_004683.1 | + | 12649 | 0.75 | 0.2613 |
Target: 5'- cCGCug-CUggGCCCGCuGUCGGCGAucagcGCGg -3' miRNA: 3'- -GCGuaaGAa-CGGGCG-CAGCCGCU-----UGC- -5' |
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18766 | 3' | -55.4 | NC_004683.1 | + | 40882 | 0.75 | 0.248318 |
Target: 5'- uCGCAcUCg-GCCuCGcCGUCGGCGAGCGc -3' miRNA: 3'- -GCGUaAGaaCGG-GC-GCAGCCGCUUGC- -5' |
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18766 | 3' | -55.4 | NC_004683.1 | + | 10451 | 1.08 | 0.001262 |
Target: 5'- cCGCAUUCUUGCCCGCGUCGGCGAACGc -3' miRNA: 3'- -GCGUAAGAACGGGCGCAGCCGCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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