Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 317 | 0.67 | 0.786812 |
Target: 5'- aGACGGuuCUCGgccagcaggCGCUGCGg-UUGGCg -3' miRNA: 3'- -CUGCUu-GAGCaa-------GCGGCGCagAACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 735 | 0.66 | 0.842831 |
Target: 5'- cACGAACUCGaaCGCCGuCGacc-GGCc -3' miRNA: 3'- cUGCUUGAGCaaGCGGC-GCagaaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 2018 | 0.67 | 0.786812 |
Target: 5'- cACGAugUCGcUCuUgGCGUCcUUGGCg -3' miRNA: 3'- cUGCUugAGCaAGcGgCGCAG-AACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 2401 | 0.67 | 0.776847 |
Target: 5'- cGCGAACUCGUUCa--GCaUCUgGGCg -3' miRNA: 3'- cUGCUUGAGCAAGcggCGcAGAaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 2534 | 0.67 | 0.756477 |
Target: 5'- -cCGGAC-CGUUCGCCugauacgccuGCGUCgcaaGGCc -3' miRNA: 3'- cuGCUUGaGCAAGCGG----------CGCAGaa--CCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 2906 | 0.7 | 0.615701 |
Target: 5'- cGACGGACUCGUU-GCCG-GaCU-GGCg -3' miRNA: 3'- -CUGCUUGAGCAAgCGGCgCaGAaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 4459 | 0.75 | 0.338222 |
Target: 5'- cGugGGACUCGUcgUCGCUGgCGUCUcgcUGcGCg -3' miRNA: 3'- -CugCUUGAGCA--AGCGGC-GCAGA---AC-CG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 6460 | 0.66 | 0.824946 |
Target: 5'- -cCGAGCgUCGUcgCGCCaGCGUCgaGGa -3' miRNA: 3'- cuGCUUG-AGCAa-GCGG-CGCAGaaCCg -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 6690 | 0.68 | 0.735596 |
Target: 5'- cGGCGAACUg----GCCGCGcacCUUGGCg -3' miRNA: 3'- -CUGCUUGAgcaagCGGCGCa--GAACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 7662 | 0.74 | 0.380995 |
Target: 5'- cGACGGAga-GUaCGCCGCGUCgugGGCg -3' miRNA: 3'- -CUGCUUgagCAaGCGGCGCAGaa-CCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 8068 | 0.7 | 0.604683 |
Target: 5'- cGACGAAaucCUC-UUCGUCggggGCGUCUUGGUc -3' miRNA: 3'- -CUGCUU---GAGcAAGCGG----CGCAGAACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 10049 | 0.68 | 0.724992 |
Target: 5'- -cCGAGC-CGUUCgGCCGCGgc--GGCg -3' miRNA: 3'- cuGCUUGaGCAAG-CGGCGCagaaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 10829 | 1.11 | 0.001261 |
Target: 5'- cGACGAACUCGUUCGCCGCGUCUUGGCc -3' miRNA: 3'- -CUGCUUGAGCAAGCGGCGCAGAACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 11470 | 0.69 | 0.681764 |
Target: 5'- uGGCGAACUCuUUCaG-CGCGUCggcGGCg -3' miRNA: 3'- -CUGCUUGAGcAAG-CgGCGCAGaa-CCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 23088 | 0.67 | 0.806246 |
Target: 5'- cGGCGcGCUcucgugggCGUUCGCCaGCGgcagCgUGGCg -3' miRNA: 3'- -CUGCuUGA--------GCAAGCGG-CGCa---GaACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 23695 | 0.66 | 0.815693 |
Target: 5'- cGACGggUUcucgaCGUUcCGCCGCGgc--GGCa -3' miRNA: 3'- -CUGCuuGA-----GCAA-GCGGCGCagaaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 24721 | 0.68 | 0.746094 |
Target: 5'- cGCGAACUCGgcggccugggCGCCGgugaCGUCgaGGUa -3' miRNA: 3'- cUGCUUGAGCaa--------GCGGC----GCAGaaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 25955 | 0.67 | 0.765712 |
Target: 5'- cGGCGAACUCGa-CGCCGagccgcagccagcCGUCgcgaacccaggUGGCg -3' miRNA: 3'- -CUGCUUGAGCaaGCGGC-------------GCAGa----------ACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 25998 | 0.67 | 0.766732 |
Target: 5'- cGGCGAuCUCGcUgGCCGCGUUccUGcGCu -3' miRNA: 3'- -CUGCUuGAGCaAgCGGCGCAGa-AC-CG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 29328 | 0.66 | 0.842831 |
Target: 5'- gGGCGGugUCGaaggCGCCGgCGcacuUCUcGGCg -3' miRNA: 3'- -CUGCUugAGCaa--GCGGC-GC----AGAaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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