Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 56310 | 0.68 | 0.746094 |
Target: 5'- -uCGAugUCGggUUGCCaGCGUCggggauacUGGCg -3' miRNA: 3'- cuGCUugAGCa-AGCGG-CGCAGa-------ACCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 56042 | 0.73 | 0.424363 |
Target: 5'- cGACGGcacACUCgGUUgcgaggccaaccacCGCCGCGUCU-GGCg -3' miRNA: 3'- -CUGCU---UGAG-CAA--------------GCGGCGCAGAaCCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 46106 | 0.76 | 0.284392 |
Target: 5'- cGCGGgaccGCUCGgcCGCCGCGUCg-GGCa -3' miRNA: 3'- cUGCU----UGAGCaaGCGGCGCAGaaCCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 44814 | 0.67 | 0.806246 |
Target: 5'- cGACGAGCUUGUcgGCCucgGCGUagUGGUa -3' miRNA: 3'- -CUGCUUGAGCAagCGG---CGCAgaACCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 44367 | 0.67 | 0.806246 |
Target: 5'- gGGCGA--UCGUcggcgcggaUCGCCGCGUCgagccGCg -3' miRNA: 3'- -CUGCUugAGCA---------AGCGGCGCAGaac--CG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 43165 | 0.67 | 0.766732 |
Target: 5'- cGCGAcCUCGgccUCGCCGUcaggaUUGGCg -3' miRNA: 3'- cUGCUuGAGCa--AGCGGCGcag--AACCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 42643 | 0.67 | 0.786812 |
Target: 5'- cGGCGcGCUCGgccUCGCUcaugguguGCGUCgcgcGGCg -3' miRNA: 3'- -CUGCuUGAGCa--AGCGG--------CGCAGaa--CCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 41287 | 0.75 | 0.363459 |
Target: 5'- cGGCGucCUCGgcggccUUCGCCGCGUCggcgGGUg -3' miRNA: 3'- -CUGCuuGAGC------AAGCGGCGCAGaa--CCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 40533 | 0.68 | 0.724992 |
Target: 5'- cGGCGGgccACUCGaUCGCCcUGUUcUGGCu -3' miRNA: 3'- -CUGCU---UGAGCaAGCGGcGCAGaACCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 40402 | 0.68 | 0.745049 |
Target: 5'- cGACGAGCUCGaccUGCCGCGcUCcaccgagccgcagUgugGGCa -3' miRNA: 3'- -CUGCUUGAGCaa-GCGGCGC-AG-------------Aa--CCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 39063 | 0.66 | 0.842831 |
Target: 5'- aGACGuuGCcCGaagCGCUGCGUCUcgcGGCu -3' miRNA: 3'- -CUGCu-UGaGCaa-GCGGCGCAGAa--CCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 35757 | 0.72 | 0.48685 |
Target: 5'- cGACGAAuUUCGggcggcauagUCGCCGCG-CUUGGa -3' miRNA: 3'- -CUGCUU-GAGCa---------AGCGGCGCaGAACCg -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 35283 | 0.67 | 0.786812 |
Target: 5'- -cCGGACUCG-UCGCCac--CUUGGCg -3' miRNA: 3'- cuGCUUGAGCaAGCGGcgcaGAACCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 34910 | 0.73 | 0.427231 |
Target: 5'- cACGGGCUUGUUUGCgGCG-CU-GGCa -3' miRNA: 3'- cUGCUUGAGCAAGCGgCGCaGAaCCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 30227 | 0.66 | 0.842831 |
Target: 5'- cGACucACUCGUUCaGUCacCGUCUugaUGGCa -3' miRNA: 3'- -CUGcuUGAGCAAG-CGGc-GCAGA---ACCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 29328 | 0.66 | 0.842831 |
Target: 5'- gGGCGGugUCGaaggCGCCGgCGcacuUCUcGGCg -3' miRNA: 3'- -CUGCUugAGCaa--GCGGC-GC----AGAaCCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 25998 | 0.67 | 0.766732 |
Target: 5'- cGGCGAuCUCGcUgGCCGCGUUccUGcGCu -3' miRNA: 3'- -CUGCUuGAGCaAgCGGCGCAGa-AC-CG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 25955 | 0.67 | 0.765712 |
Target: 5'- cGGCGAACUCGa-CGCCGagccgcagccagcCGUCgcgaacccaggUGGCg -3' miRNA: 3'- -CUGCUUGAGCaaGCGGC-------------GCAGa----------ACCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 24721 | 0.68 | 0.746094 |
Target: 5'- cGCGAACUCGgcggccugggCGCCGgugaCGUCgaGGUa -3' miRNA: 3'- cUGCUUGAGCaa--------GCGGC----GCAGaaCCG- -5' |
|||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 23695 | 0.66 | 0.815693 |
Target: 5'- cGACGggUUcucgaCGUUcCGCCGCGgc--GGCa -3' miRNA: 3'- -CUGCuuGA-----GCAA-GCGGCGCagaaCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home