miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18767 3' -53.4 NC_004683.1 + 317 0.67 0.786812
Target:  5'- aGACGGuuCUCGgccagcaggCGCUGCGg-UUGGCg -3'
miRNA:   3'- -CUGCUu-GAGCaa-------GCGGCGCagAACCG- -5'
18767 3' -53.4 NC_004683.1 + 735 0.66 0.842831
Target:  5'- cACGAACUCGaaCGCCGuCGacc-GGCc -3'
miRNA:   3'- cUGCUUGAGCaaGCGGC-GCagaaCCG- -5'
18767 3' -53.4 NC_004683.1 + 2018 0.67 0.786812
Target:  5'- cACGAugUCGcUCuUgGCGUCcUUGGCg -3'
miRNA:   3'- cUGCUugAGCaAGcGgCGCAG-AACCG- -5'
18767 3' -53.4 NC_004683.1 + 2401 0.67 0.776847
Target:  5'- cGCGAACUCGUUCa--GCaUCUgGGCg -3'
miRNA:   3'- cUGCUUGAGCAAGcggCGcAGAaCCG- -5'
18767 3' -53.4 NC_004683.1 + 2534 0.67 0.756477
Target:  5'- -cCGGAC-CGUUCGCCugauacgccuGCGUCgcaaGGCc -3'
miRNA:   3'- cuGCUUGaGCAAGCGG----------CGCAGaa--CCG- -5'
18767 3' -53.4 NC_004683.1 + 2906 0.7 0.615701
Target:  5'- cGACGGACUCGUU-GCCG-GaCU-GGCg -3'
miRNA:   3'- -CUGCUUGAGCAAgCGGCgCaGAaCCG- -5'
18767 3' -53.4 NC_004683.1 + 4459 0.75 0.338222
Target:  5'- cGugGGACUCGUcgUCGCUGgCGUCUcgcUGcGCg -3'
miRNA:   3'- -CugCUUGAGCA--AGCGGC-GCAGA---AC-CG- -5'
18767 3' -53.4 NC_004683.1 + 6460 0.66 0.824946
Target:  5'- -cCGAGCgUCGUcgCGCCaGCGUCgaGGa -3'
miRNA:   3'- cuGCUUG-AGCAa-GCGG-CGCAGaaCCg -5'
18767 3' -53.4 NC_004683.1 + 6690 0.68 0.735596
Target:  5'- cGGCGAACUg----GCCGCGcacCUUGGCg -3'
miRNA:   3'- -CUGCUUGAgcaagCGGCGCa--GAACCG- -5'
18767 3' -53.4 NC_004683.1 + 7662 0.74 0.380995
Target:  5'- cGACGGAga-GUaCGCCGCGUCgugGGCg -3'
miRNA:   3'- -CUGCUUgagCAaGCGGCGCAGaa-CCG- -5'
18767 3' -53.4 NC_004683.1 + 8068 0.7 0.604683
Target:  5'- cGACGAAaucCUC-UUCGUCggggGCGUCUUGGUc -3'
miRNA:   3'- -CUGCUU---GAGcAAGCGG----CGCAGAACCG- -5'
18767 3' -53.4 NC_004683.1 + 10049 0.68 0.724992
Target:  5'- -cCGAGC-CGUUCgGCCGCGgc--GGCg -3'
miRNA:   3'- cuGCUUGaGCAAG-CGGCGCagaaCCG- -5'
18767 3' -53.4 NC_004683.1 + 10829 1.11 0.001261
Target:  5'- cGACGAACUCGUUCGCCGCGUCUUGGCc -3'
miRNA:   3'- -CUGCUUGAGCAAGCGGCGCAGAACCG- -5'
18767 3' -53.4 NC_004683.1 + 11470 0.69 0.681764
Target:  5'- uGGCGAACUCuUUCaG-CGCGUCggcGGCg -3'
miRNA:   3'- -CUGCUUGAGcAAG-CgGCGCAGaa-CCG- -5'
18767 3' -53.4 NC_004683.1 + 23088 0.67 0.806246
Target:  5'- cGGCGcGCUcucgugggCGUUCGCCaGCGgcagCgUGGCg -3'
miRNA:   3'- -CUGCuUGA--------GCAAGCGG-CGCa---GaACCG- -5'
18767 3' -53.4 NC_004683.1 + 23695 0.66 0.815693
Target:  5'- cGACGggUUcucgaCGUUcCGCCGCGgc--GGCa -3'
miRNA:   3'- -CUGCuuGA-----GCAA-GCGGCGCagaaCCG- -5'
18767 3' -53.4 NC_004683.1 + 24721 0.68 0.746094
Target:  5'- cGCGAACUCGgcggccugggCGCCGgugaCGUCgaGGUa -3'
miRNA:   3'- cUGCUUGAGCaa--------GCGGC----GCAGaaCCG- -5'
18767 3' -53.4 NC_004683.1 + 25955 0.67 0.765712
Target:  5'- cGGCGAACUCGa-CGCCGagccgcagccagcCGUCgcgaacccaggUGGCg -3'
miRNA:   3'- -CUGCUUGAGCaaGCGGC-------------GCAGa----------ACCG- -5'
18767 3' -53.4 NC_004683.1 + 25998 0.67 0.766732
Target:  5'- cGGCGAuCUCGcUgGCCGCGUUccUGcGCu -3'
miRNA:   3'- -CUGCUuGAGCaAgCGGCGCAGa-AC-CG- -5'
18767 3' -53.4 NC_004683.1 + 29328 0.66 0.842831
Target:  5'- gGGCGGugUCGaaggCGCCGgCGcacuUCUcGGCg -3'
miRNA:   3'- -CUGCUugAGCaa--GCGGC-GC----AGAaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.