Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18767 | 3' | -53.4 | NC_004683.1 | + | 6690 | 0.68 | 0.735596 |
Target: 5'- cGGCGAACUg----GCCGCGcacCUUGGCg -3' miRNA: 3'- -CUGCUUGAgcaagCGGCGCa--GAACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 30227 | 0.66 | 0.842831 |
Target: 5'- cGACucACUCGUUCaGUCacCGUCUugaUGGCa -3' miRNA: 3'- -CUGcuUGAGCAAG-CGGc-GCAGA---ACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 10829 | 1.11 | 0.001261 |
Target: 5'- cGACGAACUCGUUCGCCGCGUCUUGGCc -3' miRNA: 3'- -CUGCUUGAGCAAGCGGCGCAGAACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 46106 | 0.76 | 0.284392 |
Target: 5'- cGCGGgaccGCUCGgcCGCCGCGUCg-GGCa -3' miRNA: 3'- cUGCU----UGAGCaaGCGGCGCAGaaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 4459 | 0.75 | 0.338222 |
Target: 5'- cGugGGACUCGUcgUCGCUGgCGUCUcgcUGcGCg -3' miRNA: 3'- -CugCUUGAGCA--AGCGGC-GCAGA---AC-CG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 41287 | 0.75 | 0.363459 |
Target: 5'- cGGCGucCUCGgcggccUUCGCCGCGUCggcgGGUg -3' miRNA: 3'- -CUGCuuGAGC------AAGCGGCGCAGaa--CCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 35757 | 0.72 | 0.48685 |
Target: 5'- cGACGAAuUUCGggcggcauagUCGCCGCG-CUUGGa -3' miRNA: 3'- -CUGCUU-GAGCa---------AGCGGCGCaGAACCg -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 8068 | 0.7 | 0.604683 |
Target: 5'- cGACGAAaucCUC-UUCGUCggggGCGUCUUGGUc -3' miRNA: 3'- -CUGCUU---GAGcAAGCGG----CGCAGAACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 2906 | 0.7 | 0.615701 |
Target: 5'- cGACGGACUCGUU-GCCG-GaCU-GGCg -3' miRNA: 3'- -CUGCUUGAGCAAgCGGCgCaGAaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 44367 | 0.67 | 0.806246 |
Target: 5'- gGGCGA--UCGUcggcgcggaUCGCCGCGUCgagccGCg -3' miRNA: 3'- -CUGCUugAGCA---------AGCGGCGCAGaac--CG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 42643 | 0.67 | 0.786812 |
Target: 5'- cGGCGcGCUCGgccUCGCUcaugguguGCGUCgcgcGGCg -3' miRNA: 3'- -CUGCuUGAGCa--AGCGG--------CGCAGaa--CCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 2401 | 0.67 | 0.776847 |
Target: 5'- cGCGAACUCGUUCa--GCaUCUgGGCg -3' miRNA: 3'- cUGCUUGAGCAAGcggCGcAGAaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 56310 | 0.68 | 0.746094 |
Target: 5'- -uCGAugUCGggUUGCCaGCGUCggggauacUGGCg -3' miRNA: 3'- cuGCUugAGCa-AGCGG-CGCAGa-------ACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 2018 | 0.67 | 0.786812 |
Target: 5'- cACGAugUCGcUCuUgGCGUCcUUGGCg -3' miRNA: 3'- cUGCUugAGCaAGcGgCGCAG-AACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 24721 | 0.68 | 0.746094 |
Target: 5'- cGCGAACUCGgcggccugggCGCCGgugaCGUCgaGGUa -3' miRNA: 3'- cUGCUUGAGCaa--------GCGGC----GCAGaaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 43165 | 0.67 | 0.766732 |
Target: 5'- cGCGAcCUCGgccUCGCCGUcaggaUUGGCg -3' miRNA: 3'- cUGCUuGAGCa--AGCGGCGcag--AACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 44814 | 0.67 | 0.806246 |
Target: 5'- cGACGAGCUUGUcgGCCucgGCGUagUGGUa -3' miRNA: 3'- -CUGCUUGAGCAagCGG---CGCAgaACCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 735 | 0.66 | 0.842831 |
Target: 5'- cACGAACUCGaaCGCCGuCGacc-GGCc -3' miRNA: 3'- cUGCUUGAGCaaGCGGC-GCagaaCCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 2534 | 0.67 | 0.756477 |
Target: 5'- -cCGGAC-CGUUCGCCugauacgccuGCGUCgcaaGGCc -3' miRNA: 3'- cuGCUUGaGCAAGCGG----------CGCAGaa--CCG- -5' |
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18767 | 3' | -53.4 | NC_004683.1 | + | 25955 | 0.67 | 0.765712 |
Target: 5'- cGGCGAACUCGa-CGCCGagccgcagccagcCGUCgcgaacccaggUGGCg -3' miRNA: 3'- -CUGCUUGAGCaaGCGGC-------------GCAGa----------ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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