Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18768 | 3' | -55.6 | NC_004683.1 | + | 940 | 0.66 | 0.693005 |
Target: 5'- aCACgCCAUUGGUG-GGGCC-GUCCuccagccgcuuGGCc -3' miRNA: 3'- -GUG-GGUAACCGCaUUCGGaCAGG-----------CCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 966 | 0.67 | 0.61637 |
Target: 5'- gCACCaacagUGGUGgccguGGCUUGaCCGGCa -3' miRNA: 3'- -GUGGgua--ACCGCau---UCGGACaGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 2126 | 0.68 | 0.551055 |
Target: 5'- uCGCCCugguggUGGCGggcguGGCCgugCUGGCg -3' miRNA: 3'- -GUGGGua----ACCGCau---UCGGacaGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 2810 | 0.68 | 0.572655 |
Target: 5'- cUACaCCGagGGUGgucGCCaGUCCGGCa -3' miRNA: 3'- -GUG-GGUaaCCGCauuCGGaCAGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 3319 | 0.77 | 0.16912 |
Target: 5'- aCACCCGUugUGGCagaa-CCUGUCCGGCu -3' miRNA: 3'- -GUGGGUA--ACCGcauucGGACAGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 11068 | 1.1 | 0.000737 |
Target: 5'- cCACCCAUUGGCGUAAGCCUGUCCGGCc -3' miRNA: 3'- -GUGGGUAACCGCAUUCGGACAGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 12226 | 0.66 | 0.725183 |
Target: 5'- aCGCCCGccggGGCGgGAGC--GcCCGGCg -3' miRNA: 3'- -GUGGGUaa--CCGCaUUCGgaCaGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 13462 | 0.66 | 0.703805 |
Target: 5'- cCGCgCAgggUGGCGgcGGCUuccagggcgUGUCgGGCc -3' miRNA: 3'- -GUGgGUa--ACCGCauUCGG---------ACAGgCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 13739 | 0.66 | 0.693005 |
Target: 5'- uGCCCAgUGGCG--AGCCcga-CGGCa -3' miRNA: 3'- gUGGGUaACCGCauUCGGacagGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 13818 | 0.66 | 0.693005 |
Target: 5'- uGCCCGgcGGUGUuuggcagcgcAGGCCgcgcaCCGGCg -3' miRNA: 3'- gUGGGUaaCCGCA----------UUCGGaca--GGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 13865 | 0.69 | 0.540347 |
Target: 5'- gGCCCGgcugacugGGC-UGAGCCggguucggGUUCGGCg -3' miRNA: 3'- gUGGGUaa------CCGcAUUCGGa-------CAGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 13989 | 0.68 | 0.551055 |
Target: 5'- gCACCCGUUGGUGac-GCUgugGUCCuacgacggGGCg -3' miRNA: 3'- -GUGGGUAACCGCauuCGGa--CAGG--------CCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 16217 | 0.66 | 0.721998 |
Target: 5'- aCGCCCAgucgUGGgugucgauguaguaCGgcAGCCgcacgCCGGCg -3' miRNA: 3'- -GUGGGUa---ACC--------------GCauUCGGaca--GGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 18300 | 0.69 | 0.519151 |
Target: 5'- uGCCCGUgGGCGaguUGAGCCgggcgacgaUGUCuaCGGCg -3' miRNA: 3'- gUGGGUAaCCGC---AUUCGG---------ACAG--GCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 21940 | 0.69 | 0.508675 |
Target: 5'- cCGCCCGgcggUGGCGggcGGCCgccgaGUucaCCGGCc -3' miRNA: 3'- -GUGGGUa---ACCGCau-UCGGa----CA---GGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 23039 | 0.66 | 0.725183 |
Target: 5'- -uCCCGUgggucggucucGGUGUcGGCCUGcUCGGCg -3' miRNA: 3'- guGGGUAa----------CCGCAuUCGGACaGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 23908 | 0.67 | 0.660299 |
Target: 5'- gCGCCgCGUaGGCGUGgcGGCCga--CGGCa -3' miRNA: 3'- -GUGG-GUAaCCGCAU--UCGGacagGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 24288 | 0.71 | 0.42855 |
Target: 5'- uCACCCcg-GGCGUcggaugagccGAGCUUGagCGGCa -3' miRNA: 3'- -GUGGGuaaCCGCA----------UUCGGACagGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 25112 | 0.73 | 0.323614 |
Target: 5'- aACCCGgcGGCGUu-GCCgGUCCuGGCc -3' miRNA: 3'- gUGGGUaaCCGCAuuCGGaCAGG-CCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 27063 | 0.7 | 0.467731 |
Target: 5'- uGCCgAggUGGCc--GGCCUGcCCGGCg -3' miRNA: 3'- gUGGgUa-ACCGcauUCGGACaGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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