Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18768 | 3' | -55.6 | NC_004683.1 | + | 31112 | 0.69 | 0.528651 |
Target: 5'- aACCCAUUcaggauaGGCGUGGGCCUGa--GGa -3' miRNA: 3'- gUGGGUAA-------CCGCAUUCGGACaggCCg -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 31503 | 0.69 | 0.52971 |
Target: 5'- uCGCCUGggaccaGGCGUAGGCCgacaugGUgUCGGCg -3' miRNA: 3'- -GUGGGUaa----CCGCAUUCGGa-----CA-GGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 31507 | 0.71 | 0.42855 |
Target: 5'- cCGCCgCcgUGGgGuUGAGCCUGUCacugguGGCg -3' miRNA: 3'- -GUGG-GuaACCgC-AUUCGGACAGg-----CCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 31993 | 0.67 | 0.64933 |
Target: 5'- aACCCGcgGGCGgcugAGGCg-GUgCGGCu -3' miRNA: 3'- gUGGGUaaCCGCa---UUCGgaCAgGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 32632 | 0.69 | 0.53928 |
Target: 5'- uCGCCCAgccgcagUUGGuCGgcAGCCUGgaucuugCgGGCa -3' miRNA: 3'- -GUGGGU-------AACC-GCauUCGGACa------GgCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 40206 | 0.66 | 0.682147 |
Target: 5'- uGCagAUUGGCGaUGgucgcGGCCgcGUCCGGCu -3' miRNA: 3'- gUGggUAACCGC-AU-----UCGGa-CAGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 40316 | 0.67 | 0.605398 |
Target: 5'- gCGCCUgcagcucGGCGcGGGCCUGcUCGGCg -3' miRNA: 3'- -GUGGGuaa----CCGCaUUCGGACaGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 41395 | 0.66 | 0.703805 |
Target: 5'- gUACCCGUcggcUGGCGgcguGGCUgGUgUGGCc -3' miRNA: 3'- -GUGGGUA----ACCGCau--UCGGaCAgGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 42580 | 0.7 | 0.477813 |
Target: 5'- gCGCgCCGc-GGCGgucgGGGCCggucGUCCGGCu -3' miRNA: 3'- -GUG-GGUaaCCGCa---UUCGGa---CAGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 52315 | 0.66 | 0.714534 |
Target: 5'- gGCCCA--GGCGcucaaggacGGCCgauUCCGGCg -3' miRNA: 3'- gUGGGUaaCCGCau-------UCGGac-AGGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 52797 | 0.69 | 0.486978 |
Target: 5'- gACCCGUcgggcaccgcgcuUGGCGUAcAGCUguacCCGGCa -3' miRNA: 3'- gUGGGUA-------------ACCGCAU-UCGGaca-GGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 53851 | 0.66 | 0.682147 |
Target: 5'- uCACCCGUgaugccguUGGCG--AGCCgugcaGUCCaGCu -3' miRNA: 3'- -GUGGGUA--------ACCGCauUCGGa----CAGGcCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 54407 | 0.66 | 0.699493 |
Target: 5'- -uCCUGUUGGCG--GGCCUGgucgacgugcucaCCGGUa -3' miRNA: 3'- guGGGUAACCGCauUCGGACa------------GGCCG- -5' |
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18768 | 3' | -55.6 | NC_004683.1 | + | 56663 | 0.7 | 0.438165 |
Target: 5'- gGCCCAUggucgaGGCGggcaAGGCgCUGUgCUGGCg -3' miRNA: 3'- gUGGGUAa-----CCGCa---UUCG-GACA-GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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